##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043384_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2953388 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.32941184835856 33.0 31.0 34.0 31.0 34.0 2 32.676443799460145 34.0 31.0 34.0 31.0 34.0 3 32.832184596131626 34.0 31.0 34.0 31.0 34.0 4 36.218409839817866 37.0 37.0 37.0 35.0 37.0 5 36.182248996745436 37.0 37.0 37.0 35.0 37.0 6 36.2964585079915 37.0 37.0 37.0 35.0 37.0 7 36.24751742744265 37.0 37.0 37.0 35.0 37.0 8 36.230150931743474 37.0 37.0 37.0 35.0 37.0 9 37.83168991002875 39.0 38.0 39.0 35.0 39.0 10 37.66823526065657 39.0 37.0 39.0 35.0 39.0 11 37.44339958041409 39.0 37.0 39.0 35.0 39.0 12 37.46209979860418 39.0 37.0 39.0 35.0 39.0 13 37.45946248850473 39.0 37.0 39.0 35.0 39.0 14 38.87443674857486 41.0 38.0 41.0 35.0 41.0 15 38.927626847539166 41.0 38.0 41.0 35.0 41.0 16 38.82238703482238 41.0 38.0 41.0 35.0 41.0 17 38.81549630458308 41.0 38.0 41.0 35.0 41.0 18 38.622333740097815 40.0 38.0 41.0 35.0 41.0 19 38.40387277255816 40.0 37.0 41.0 35.0 41.0 20 38.180422619716744 40.0 35.0 41.0 34.0 41.0 21 38.10890915788918 40.0 35.0 41.0 34.0 41.0 22 38.04183195706084 40.0 35.0 41.0 34.0 41.0 23 38.043342764310005 40.0 35.0 41.0 34.0 41.0 24 37.950286586117365 40.0 35.0 41.0 34.0 41.0 25 37.850078282975346 40.0 35.0 41.0 34.0 41.0 26 37.74509309308496 40.0 35.0 41.0 34.0 41.0 27 37.79707644237737 40.0 35.0 41.0 34.0 41.0 28 37.77252599387551 40.0 35.0 41.0 34.0 41.0 29 37.730828120111546 40.0 35.0 41.0 34.0 41.0 30 37.69157591213887 40.0 35.0 41.0 34.0 41.0 31 37.61356922964406 40.0 35.0 41.0 34.0 41.0 32 37.442430185265195 40.0 35.0 41.0 33.0 41.0 33 37.1998362558526 40.0 35.0 41.0 33.0 41.0 34 37.02511522360083 40.0 35.0 41.0 33.0 41.0 35 36.84333924293049 40.0 35.0 41.0 32.0 41.0 36 36.74298737585444 39.0 35.0 41.0 32.0 41.0 37 36.70438222136746 39.0 35.0 41.0 32.0 41.0 38 36.534853192333685 39.0 35.0 41.0 32.0 41.0 39 36.47903120077687 39.0 35.0 41.0 31.0 41.0 40 36.386920716140246 39.0 35.0 41.0 31.0 41.0 41 36.34729842472442 39.0 35.0 41.0 31.0 41.0 42 36.2728273426993 39.0 35.0 41.0 31.0 41.0 43 36.17787740723535 38.0 35.0 41.0 31.0 41.0 44 36.00260175771013 38.0 35.0 41.0 31.0 41.0 45 35.916079770081005 38.0 35.0 41.0 31.0 41.0 46 35.86858685685728 38.0 35.0 40.0 31.0 41.0 47 35.76289705246991 37.0 35.0 40.0 31.0 41.0 48 35.65228002551646 37.0 35.0 40.0 30.0 41.0 49 35.62092620407478 37.0 35.0 40.0 31.0 41.0 50 35.52812938902711 37.0 35.0 40.0 30.0 41.0 51 35.40572285117973 36.0 35.0 40.0 30.0 41.0 52 35.02682614001276 36.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 7.0 13 10.0 14 24.0 15 50.0 16 104.0 17 202.0 18 404.0 19 847.0 20 1572.0 21 2732.0 22 4264.0 23 6835.0 24 11444.0 25 19812.0 26 29888.0 27 36574.0 28 39066.0 29 40424.0 30 42798.0 31 49830.0 32 61322.0 33 81721.0 34 174884.0 35 267182.0 36 274457.0 37 301271.0 38 454779.0 39 1048147.0 40 2736.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.13489050541277 17.769998388291683 23.481912975877194 26.613198130418354 2 34.43167643398023 20.33999596395733 24.380575799725605 20.84775180233684 3 28.264691263051112 20.744954608063686 31.069503905345318 19.92085022353988 4 23.560195951226184 24.106111354146492 29.051143974310182 23.28254872031714 5 21.60285069215423 33.14982657205894 26.424872045257853 18.82245069052898 6 80.20541154768692 2.3764571400709964 14.586603588827476 2.8315277234146006 7 80.10359627654748 2.3652158131610204 13.219055538926819 4.312132371364683 8 70.26259333348683 4.269672660686642 18.386781553930604 7.080952451895925 9 40.611257308555466 18.014971280441312 23.026029766491906 18.34774164451132 10 26.2933959235969 17.310458361718812 33.553430839429154 22.84271487525513 11 22.715098727292183 14.375049942642146 39.36590789967319 23.543943430392485 12 19.898164413209507 16.218796852970215 41.67528953188677 22.207749201933506 13 16.836968254763683 20.874839337059676 40.90966036294588 21.378532045230767 14 16.015234029528123 19.628677302135717 40.535479930168336 23.820608738167827 15 18.95768520763273 14.638306920729685 42.05407484556719 24.349933026070396 16 19.58608215378406 19.233368592274363 35.04876433438478 26.131784919556793 17 20.209603343685288 21.16311842534743 34.615465357074655 24.011812873892627 18 21.429659767020116 24.504501271082564 32.6151186366302 21.450720325267117 19 22.4686698801512 19.829023480829473 31.84248056807978 25.859826070939544 20 23.038185297698778 23.29869966289563 33.07509883564232 20.58801620376327 21 20.754570682890293 18.956872581591043 32.905124555256535 27.383432180262123 22 20.323743443123625 22.080031475715348 31.683070426235904 25.913154654925126 23 20.758769250772332 20.970830788233716 35.548055318163414 22.72234464283054 24 25.005417506944568 18.796412797776654 32.21564521830522 23.982524476973563 25 19.488126856342614 20.754976995911136 32.87641176845034 26.880484379295915 26 18.702046598685985 19.957824708436547 34.972512924140005 26.367615768737462 27 22.934101445526288 20.416924562570173 34.63896379344671 22.010010198456822 28 21.422176835552932 22.680155807499723 31.031005746620494 24.86666161032685 29 21.69477901311985 20.113781189603262 34.64394112795203 23.547498669324856 30 24.93912076571043 23.435627150919554 28.683227533937295 22.94202454943272 31 23.380605596013798 21.481633974269553 29.29310337822189 25.844657051494757 32 23.084403403819614 22.964845797436706 28.778609515580072 25.172141283163608 33 19.547008384946373 24.397234633580144 31.376134798407797 24.679622183065685 34 20.721490031110037 22.267544934834163 29.695420987692778 27.315544046363023 35 24.723978021174325 24.571204325337543 28.81463593676144 21.89018171672669 36 21.763208897713408 24.808863583112007 28.575588442832434 24.852339076342155 37 23.267074966106723 25.89073971994198 27.874393747113483 22.967791566837814 38 21.53533501185757 21.916355047152624 27.943602398330324 28.60470754265948 39 23.995255618293296 20.01768816017401 33.57845294962937 22.408603271903317 40 19.955014376709055 19.496862586290728 35.65058163708933 24.89754139991088 41 21.032353351472953 24.002670830923673 29.672701317944 25.292274499659374 42 20.51697914395264 19.731339058735255 31.809975526412376 27.941706270899726 43 22.692683792309037 21.24874889448999 32.75089490442841 23.30767240877257 44 22.018271896547287 22.310309380277836 31.231047190548615 24.44037153262626 45 23.49085186233573 21.44780841528441 30.516376446305056 24.5449632760748 46 23.93095658274497 20.313551758184158 30.624015537409914 25.131476121660956 47 20.180856697460676 23.753025339034355 32.402853942658396 23.663264020846565 48 20.939747842139266 21.765375900491232 30.047829814436845 27.24704644293266 49 20.93798715238228 18.902358917961337 34.225912748341905 25.933741181314478 50 20.49094125120032 19.35597354631359 34.65433596940192 25.498749233084173 51 20.111444889733416 17.67427781246487 33.37577047106578 28.838506826735937 52 18.423214288132815 19.32221570616526 36.21762531709346 26.03694468860847 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 914.0 1 5739.5 2 10565.0 3 74585.5 4 138606.0 5 78161.0 6 17716.0 7 16422.5 8 15129.0 9 14715.5 10 14302.0 11 14123.5 12 13945.0 13 13144.5 14 11615.5 15 10887.0 16 10504.5 17 10122.0 18 9383.5 19 8645.0 20 8351.0 21 8057.0 22 7908.0 23 7759.0 24 8115.0 25 8471.0 26 9692.5 27 10914.0 28 12014.5 29 13115.0 30 14612.0 31 16109.0 32 19550.5 33 22992.0 34 26990.0 35 30988.0 36 34220.0 37 37452.0 38 41857.0 39 52522.0 40 58782.0 41 74886.5 42 90991.0 43 122110.0 44 153229.0 45 193355.0 46 233481.0 47 256925.0 48 280369.0 49 276288.0 50 272207.0 51 246517.5 52 220828.0 53 190674.0 54 160520.0 55 154258.5 56 147997.0 57 145970.5 58 143944.0 59 140960.5 60 137977.0 61 134433.5 62 130890.0 63 134612.5 64 115802.5 65 93270.0 66 80542.0 67 67814.0 68 58287.0 69 48760.0 70 43041.0 71 37322.0 72 37200.5 73 37079.0 74 29369.5 75 21660.0 76 16500.5 77 11341.0 78 8627.5 79 5914.0 80 4314.5 81 2715.0 82 2166.5 83 1618.0 84 1145.5 85 673.0 86 459.0 87 245.0 88 149.0 89 44.0 90 35.0 91 31.5 92 28.0 93 19.0 94 10.0 95 7.5 96 5.0 97 3.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2953388.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.531208628633483 #Duplication Level Percentage of deduplicated Percentage of total 1 72.36605227063731 17.752267258815994 2 11.40075441849203 5.59348570327686 3 4.433186279944936 3.262542525687743 4 2.211949094383929 2.170471388409962 5 1.3338858220811225 1.636091569412415 6 0.8446122469104909 1.243161554355609 7 0.5990077858651531 1.028606947566372 8 0.4729850733854496 0.9282316410758387 9 0.35499302358632356 0.7837567130974958 >10 4.6871166230691585 28.47669461198151 >50 1.0795748219857215 17.507264278107318 >100 0.20000768938282218 8.43434960242452 >500 0.008772943573374083 1.480685214971162 >1k 0.0058486290489160545 2.6471966631390074 >5k 8.355184355594364E-4 1.5763345078981261 >10k+ 4.177592177797182E-4 5.478859819780016 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 112096 3.79550536536344 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 28111 0.9518221107419683 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 20179 0.6832492039650733 No Hit CCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT 9198 0.31143893047577903 Illumina Single End Adapter 1 (95% over 21bp) GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 8433 0.2855364753970694 No Hit CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCTT 8311 0.28140562635183725 Illumina Single End Adapter 1 (95% over 22bp) GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 7584 0.2567898291724623 No Hit GCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT 7100 0.24040187066514795 Illumina Single End Adapter 1 (95% over 21bp) AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 5519 0.1868701301691481 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 4518 0.1529768523472026 No Hit CGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC 4427 0.14989564527248028 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA 3852 0.13042647969044366 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2975 0.10073176975053735 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2889901360742307 0.0 2 0.0 0.0 0.0 1.0037624585730016 0.0 3 0.0 0.0 0.0 1.6568767801589226 0.0 4 0.0 0.0 0.0 2.0809321362448823 0.0 5 0.0 0.0 0.0 4.36237974827554 0.0 6 0.0 0.0 0.0 4.996295779626653 0.0 7 0.0 0.0 0.0 6.96447605258774 0.0 8 0.0 0.0 0.0 9.178678859668963 0.0 9 0.0 0.0 0.0 11.087029540310992 0.0 10 0.0 0.0 0.0 12.302887395763781 0.0 11 0.0 0.0 0.0 13.400779037498628 0.0 12 0.0 0.0 0.0 14.205651272369225 0.0 13 0.0 0.0 0.0 14.585046055580912 0.0 14 0.0 0.0 0.0 14.831678059232312 0.0 15 0.0 0.0 0.0 15.63035402053506 0.0 16 0.0 0.0 0.0 16.519434628975265 0.0 17 0.0 0.0 0.0 17.598263418148917 0.0 18 0.0 0.0 0.0 18.193986025540838 0.0 19 3.3859418403541965E-5 0.0 0.0 18.847574378984408 0.0 20 3.3859418403541965E-5 0.0 0.0 19.5807323656763 0.0 21 3.3859418403541965E-5 0.0 0.0 20.297570112697688 0.0 22 6.771883680708393E-5 0.0 0.0 21.0069926470887 0.0 23 1.015782552106259E-4 0.0 0.0 21.613685706043363 0.0 24 2.031565104212518E-4 0.0 0.0 22.102006238259246 0.0 25 2.3701592882479375E-4 0.0 0.0 22.583622605631227 0.0 26 2.3701592882479375E-4 0.0 0.0 23.082574995225823 0.0 27 2.3701592882479375E-4 0.0 0.0 23.628185663380496 0.0 28 2.3701592882479375E-4 0.0 0.0 24.169733201326746 0.0 29 2.3701592882479375E-4 0.0 0.0 24.706371123604484 0.0 30 2.708753472283357E-4 0.0 0.0 25.246530425396188 0.0 31 2.708753472283357E-4 0.0 0.0 25.744805626622714 0.0 32 2.708753472283357E-4 0.0 0.0 26.294987316261867 0.0 33 2.708753472283357E-4 0.0 0.0 26.81848778419903 0.0 34 2.708753472283357E-4 0.0 0.0 27.423928044672763 0.0 35 2.708753472283357E-4 0.0 0.0 27.911605247938976 0.0 36 2.708753472283357E-4 0.0 0.0 28.425320343957516 0.0 37 2.708753472283357E-4 0.0 0.0 28.960705467754323 0.0 38 2.708753472283357E-4 0.0 0.0 29.553922478184376 0.0 39 2.708753472283357E-4 0.0 0.0 30.168403203371856 0.0 40 2.708753472283357E-4 0.0 0.0 30.74641733493872 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 24540 0.0 45.15648 1 TACGCGG 270 0.0 43.444447 1 TACGGGT 120 0.0 42.166668 3 CACTTAC 7620 0.0 41.89501 36 ATTGCGG 605 0.0 41.818184 1 TCGGCGT 2855 0.0 41.7303 4 GCACTTA 7655 0.0 41.643368 35 CTTACTG 7585 0.0 41.54252 38 ACTTACT 7625 0.0 41.505577 37 CGACGGT 955 0.0 41.424084 27 CGCACTT 7760 0.0 41.25773 34 ACCCGCA 7885 0.0 41.21623 31 CGGTCTA 945 0.0 41.13228 30 TACGGGA 370 0.0 41.027023 3 CCGCACT 7795 0.0 41.01347 33 CCCGCAC 7920 0.0 41.00505 32 TCACGAC 1035 0.0 40.88889 24 ATAACGG 135 0.0 40.88889 1 CTTCTTA 2980 0.0 40.75168 18 CACGACG 980 0.0 40.602043 25 >>END_MODULE