SRR1043383_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043383_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2895708
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	106066	3.6628693224593083	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	26678	0.9212945504173764	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	16401	0.5663899813102702	No Hit
CCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	8862	0.30603914483090144	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8031	0.2773414999026145	No Hit
CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT	7734	0.26708494088492346	Illumina Single End Adapter 1 (95% over 21bp)
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7312	0.2525116482739282	No Hit
GCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	7090	0.24484512941221975	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5311	0.18340937691231296	No Hit
CGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTG	4432	0.15305410628419716	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4401	0.1519835563530577	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	3776	0.1303998883865362	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	23915	0.0	44.021534	1
ACGTAGG	210	0.0	43.92857	1
TACGGGA	410	0.0	42.80488	3
TACGCGG	190	0.0	42.63158	1
ACGGGTA	240	0.0	41.250004	4
ATTGCGG	530	0.0	40.75472	1
CACTTAC	7015	0.0	40.734142	36
GCACTTA	7035	0.0	40.586357	35
CGCACTT	7060	0.0	40.538246	34
ACTTACT	7010	0.0	40.345936	37
ACCCGCA	7205	0.0	40.222065	31
CTTACTG	7015	0.0	40.18888	38
TACGGGT	140	0.0	40.17857	3
CACGACG	690	0.0	40.108696	25
TATCGGA	45	1.9301297E-8	40.0	41
CCGCACT	7160	0.0	39.940643	33
TCGGCGT	2395	0.0	39.832985	4
AGGGCGC	1510	0.0	39.784767	5
CCCGCAC	7330	0.0	39.751022	32
ACTACGG	210	0.0	39.642857	1