##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043383_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2895708 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.35115488163862 33.0 31.0 34.0 31.0 34.0 2 32.639744062591944 34.0 31.0 34.0 31.0 34.0 3 32.76837892494685 34.0 31.0 34.0 31.0 34.0 4 36.210624137516625 37.0 37.0 37.0 35.0 37.0 5 36.21385236356704 37.0 37.0 37.0 35.0 37.0 6 36.33463146145951 37.0 37.0 37.0 35.0 37.0 7 36.293239511718724 37.0 37.0 37.0 35.0 37.0 8 36.1912830989865 37.0 37.0 37.0 35.0 37.0 9 37.80555739736189 39.0 38.0 39.0 35.0 39.0 10 37.6283237121975 39.0 37.0 39.0 35.0 39.0 11 37.448296927728904 39.0 37.0 39.0 35.0 39.0 12 37.47446980151314 39.0 37.0 39.0 35.0 39.0 13 37.48117213475945 39.0 37.0 39.0 35.0 39.0 14 38.89874082607777 41.0 38.0 41.0 35.0 41.0 15 38.964222566640004 41.0 38.0 41.0 35.0 41.0 16 38.89575226507645 41.0 38.0 41.0 35.0 41.0 17 38.860287363228615 41.0 38.0 41.0 35.0 41.0 18 38.690612105916756 40.0 38.0 41.0 35.0 41.0 19 38.496211289259826 40.0 37.0 41.0 35.0 41.0 20 38.29108667034107 40.0 35.0 41.0 35.0 41.0 21 38.21796258462525 40.0 35.0 41.0 35.0 41.0 22 38.16551047274103 40.0 35.0 41.0 34.0 41.0 23 38.133016174282766 40.0 35.0 41.0 34.0 41.0 24 38.04357759829375 40.0 35.0 41.0 34.0 41.0 25 38.014389227090575 40.0 35.0 41.0 34.0 41.0 26 37.97165874459718 40.0 35.0 41.0 34.0 41.0 27 37.96726120175101 40.0 35.0 41.0 34.0 41.0 28 37.88263802841999 40.0 35.0 41.0 34.0 41.0 29 37.87409952937244 40.0 35.0 41.0 34.0 41.0 30 37.78967043638378 40.0 35.0 41.0 34.0 41.0 31 37.69795089836406 40.0 35.0 41.0 34.0 41.0 32 37.538995299249784 40.0 35.0 41.0 33.0 41.0 33 37.26908859594959 40.0 35.0 41.0 33.0 41.0 34 37.05263790409806 40.0 35.0 41.0 33.0 41.0 35 36.876352518969455 40.0 35.0 41.0 33.0 41.0 36 36.77127873390549 39.0 35.0 41.0 32.0 41.0 37 36.67762978863891 39.0 35.0 41.0 32.0 41.0 38 36.51379179116126 39.0 35.0 41.0 32.0 41.0 39 36.41953297777262 39.0 35.0 41.0 31.0 41.0 40 36.3048463450044 39.0 35.0 41.0 31.0 41.0 41 36.224240151285976 38.0 35.0 41.0 31.0 41.0 42 36.1287039300924 38.0 35.0 41.0 31.0 41.0 43 36.02642497102608 38.0 35.0 40.0 31.0 41.0 44 35.90768095401884 38.0 35.0 40.0 31.0 41.0 45 35.850482852552815 38.0 35.0 40.0 31.0 41.0 46 35.74476950023966 37.0 35.0 40.0 31.0 41.0 47 35.57983816047751 37.0 35.0 40.0 30.0 41.0 48 35.5004461775842 37.0 35.0 40.0 30.0 41.0 49 35.450068515195596 37.0 35.0 40.0 30.0 41.0 50 35.381936300207066 37.0 35.0 40.0 30.0 41.0 51 34.99272233250038 36.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 2.0 10 0.0 11 0.0 12 2.0 13 7.0 14 9.0 15 43.0 16 89.0 17 164.0 18 375.0 19 751.0 20 1451.0 21 2367.0 22 3804.0 23 6082.0 24 9952.0 25 17181.0 26 27841.0 27 35672.0 28 38840.0 29 39627.0 30 41810.0 31 47443.0 32 58222.0 33 77691.0 34 168731.0 35 262669.0 36 262025.0 37 295741.0 38 472896.0 39 1023954.0 40 266.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.38192524936906 17.82583050500948 23.505719499341783 26.286524746279667 2 34.192743190957096 20.446709405782627 24.45464114475631 20.905906258503965 3 28.325266221594163 20.819329849556652 30.84496088694026 20.01044304190892 4 23.74700764027312 24.247023525852747 28.662420382165603 23.34354845170853 5 21.74255829662383 33.282568546276075 26.186963602683694 18.787909554416398 6 80.46867985307911 2.3580761596127786 14.327238796176964 2.84600519113115 7 80.32522616230642 2.3797634291855396 12.997788451045478 4.297221957462562 8 70.56916650435748 4.244868612442968 18.15604335796289 7.029921525236661 9 40.7317657719632 18.042495997524615 22.812452084257114 18.41328614625508 10 26.55806455623288 17.27826148216602 33.229697193225284 22.933976768375818 11 22.91719330816505 14.373617781903425 39.23897022766107 23.47021868227045 12 20.071844260540082 16.200079566033594 41.51661700696341 22.211459166462916 13 16.920801406771677 20.88774144354334 40.859195747637536 21.332261402047443 14 16.147346348457788 19.607398259769283 40.399204615935034 23.846050775837895 15 19.08863048346035 14.665843379235751 41.948393967900074 24.29713216940382 16 19.69974182479725 19.09726395064696 34.93784594303017 26.265148281525626 17 20.40485435686195 21.036271613021754 34.48724802362669 24.071626006489605 18 21.577486404015875 24.539525394135044 32.48020863982142 21.402779562027664 19 22.629698850850986 19.863466896524095 31.584054745851446 25.922779506773473 20 23.09152027759705 23.388822353635106 32.75433848993061 20.76531887883723 21 20.82672009746839 19.063179022194227 32.74066307790703 27.369437802430358 22 20.449644784626074 22.1336543601772 31.449787064165307 25.966913791031416 23 20.86760819806417 21.02228539617945 35.232696114387224 22.877410291369156 24 25.018372018173103 18.716562581586267 32.14450490173733 24.120560498503302 25 19.373880239305898 20.805240031108106 32.88698307978567 26.933896649800324 26 18.802724584108617 19.810319272523337 34.834106201315876 26.55284994205217 27 22.81925525640016 20.52475594914957 34.529172140284864 22.126816654165406 28 21.421531452756977 22.68388249091414 30.932020770050016 24.962565286278863 29 21.640683383821848 20.161390582199587 34.47208765524701 23.725838378731556 30 25.024208241991253 23.344170061345963 28.5336781194789 23.097943577183887 31 23.489419513293466 21.517811878822034 29.095060689820933 25.89770791806356 32 23.156547552446586 22.95165810917399 28.613934830445608 25.277859507933808 33 19.58664340465268 24.245193230809186 31.294073849987637 24.8740895145505 34 20.72408543955399 22.37763614287076 29.52825353937621 27.370024878199047 35 24.75042373056952 24.604794406065807 28.603263865002965 22.041517998361712 36 21.76086124705944 24.91031554286551 28.393470612368375 24.935352597706675 37 23.238703626194354 25.970125440824837 27.720819916925326 23.070351016055486 38 21.659918748713615 21.8925388885896 27.805842301779048 28.641700060917746 39 24.0275953238379 20.025776079632337 33.46404402653859 22.482584569991175 40 20.033718869444016 19.53194175655833 35.47426052626853 24.96007884772912 41 21.1932280464743 23.947683951558652 29.497656531666866 25.361431470300182 42 20.67439120242787 19.70305707619691 31.724538523911942 27.89801319746328 43 22.828613934830447 21.05540337630728 32.66268560227758 23.453297086584694 44 21.97745767183708 22.251311250996302 31.257744220066385 24.513486857100233 45 23.55876352173631 21.404989729627435 30.47406713660355 24.562179612032704 46 24.028424136687814 20.29327542694222 30.555567066845136 25.12273336952483 47 20.405199695549413 23.53538409259497 32.34304011316058 23.716376098695033 48 21.055714181126 21.646726810852478 30.021051846387824 27.276507161633702 49 21.082098056848274 18.82044045877554 34.12623095975147 25.971230524624723 50 20.662131679022885 19.27835955835326 34.58777611554756 25.471732647076294 51 20.114251851360702 17.663037847738792 33.22382643553839 28.998883865362114 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 788.0 1 5356.0 2 9924.0 3 70608.0 4 131292.0 5 74824.5 6 18357.0 7 16548.0 8 14739.0 9 14379.0 10 14019.0 11 13680.5 12 13342.0 13 12556.0 14 11770.0 15 11064.0 16 10358.0 17 9883.0 18 9408.0 19 8783.5 20 8159.0 21 7722.0 22 7285.0 23 7411.5 24 7538.0 25 8013.5 26 10008.5 27 11528.0 28 12226.5 29 12925.0 30 15249.0 31 17573.0 32 20889.5 33 24206.0 34 29354.0 35 34502.0 36 36660.5 37 38819.0 38 44958.5 39 51098.0 40 60164.0 41 69230.0 42 88101.0 43 106972.0 44 140892.5 45 174813.0 46 217823.0 47 260833.0 48 289673.0 49 318513.0 50 284390.5 51 250268.0 52 211605.5 53 172943.0 54 161392.5 55 149842.0 56 147252.5 57 144663.0 58 144275.5 59 143888.0 60 138534.5 61 133181.0 62 129927.5 63 126674.0 64 124093.0 65 121512.0 66 99471.5 67 77431.0 68 67675.0 69 57919.0 70 48845.5 71 39772.0 72 38688.5 73 37605.0 74 31766.0 75 19865.0 76 13803.0 77 10484.0 78 7165.0 79 5407.5 80 3650.0 81 2710.0 82 1770.0 83 1260.0 84 750.0 85 526.5 86 303.0 87 201.5 88 100.0 89 66.5 90 33.0 91 27.5 92 22.0 93 14.0 94 6.0 95 3.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2895708.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.32423219855744 #Duplication Level Percentage of deduplicated Percentage of total 1 71.92507125900241 17.495221342017643 2 11.411033803845916 5.5512927174067235 3 4.548717232055407 3.3193216247428556 4 2.2313379369870727 2.171023283708947 5 1.3431845457362601 1.6335966388001344 6 0.8841720443792273 1.2904083666572133 7 0.6283436043569561 1.0698783012999975 8 0.48863921257731696 0.9508618934440741 9 0.3714372883287069 0.8131434163658998 >10 4.8890761214010245 29.408741306753683 >50 1.0642367535597477 17.07311550634115 >100 0.19807865296589014 8.265652542409002 >500 0.009054373471191828 1.442261842306771 >1k 0.006323689408451435 2.7514703451763793 >5k 8.623212829706503E-4 1.5500749003267942 >10k+ 4.3116064148532513E-4 5.2139359722426635 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 106066 3.6628693224593083 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 26678 0.9212945504173764 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 16401 0.5663899813102702 No Hit CCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC 8862 0.30603914483090144 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 8031 0.2773414999026145 No Hit CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT 7734 0.26708494088492346 Illumina Single End Adapter 1 (95% over 21bp) GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 7312 0.2525116482739282 No Hit GCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC 7090 0.24484512941221975 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5311 0.18340937691231296 No Hit CGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTG 4432 0.15305410628419716 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4401 0.1519835563530577 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 3776 0.1303998883865362 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2756148064652928 0.0 2 0.0 0.0 0.0 0.989878813747795 0.0 3 0.0 0.0 0.0 1.644986303867655 0.0 4 0.0 0.0 0.0 2.074276826254581 0.0 5 0.0 0.0 0.0 4.364044993486912 0.0 6 0.0 0.0 0.0 5.009034060064067 0.0 7 0.0 0.0 0.0 7.00281243827071 0.0 8 0.0 0.0 0.0 9.265264315324611 0.0 9 0.0 0.0 0.0 11.248475329694845 0.0 10 0.0 0.0 0.0 12.490693122372836 0.0 11 0.0 0.0 0.0 13.609659537494803 0.0 12 0.0 0.0 0.0 14.464856263131503 0.0 13 0.0 0.0 0.0 14.8479404691357 0.0 14 0.0 0.0 0.0 15.107773297583872 0.0 15 0.0 0.0 0.0 15.919560950206305 0.0 16 0.0 0.0 0.0 16.835295547755507 0.0 17 0.0 0.0 0.0 17.952086329146447 0.0 18 0.0 0.0 0.0 18.557603183746426 0.0 19 0.0 0.0 0.0 19.230530150139447 0.0 20 0.0 0.0 0.0 19.99379771717314 0.0 21 0.0 0.0 0.0 20.728022300591082 0.0 22 0.0 0.0 0.0 21.439661733848855 0.0 23 0.0 0.0 0.0 22.06323980180322 0.0 24 3.453386874643438E-5 0.0 0.0 22.575169872100364 0.0 25 3.453386874643438E-5 0.0 0.0 23.06586161311845 0.0 26 3.453386874643438E-5 0.0 0.0 23.57005609681639 0.0 27 3.453386874643438E-5 0.0 0.0 24.128088881890026 0.0 28 3.453386874643438E-5 0.0 0.0 24.67562337086474 0.0 29 3.453386874643438E-5 0.0 0.0 25.22246718246453 0.0 30 3.453386874643438E-5 0.0 0.0 25.77131395845161 0.0 31 3.453386874643438E-5 0.0 0.0 26.274610561562145 0.0 32 3.453386874643438E-5 0.0 0.0 26.835785928691706 0.0 33 3.453386874643438E-5 0.0 0.0 27.36038992881879 0.0 34 3.453386874643438E-5 0.0 0.0 27.976992155286375 0.0 35 3.453386874643438E-5 0.0 0.0 28.469548725216768 0.0 36 3.453386874643438E-5 0.0 0.0 28.98044277945152 0.0 37 3.453386874643438E-5 0.0 0.0 29.516581091739912 0.0 38 3.453386874643438E-5 0.0 0.0 30.11729773858414 0.0 39 3.453386874643438E-5 0.0 0.0 30.744363727281893 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 23915 0.0 44.021534 1 ACGTAGG 210 0.0 43.92857 1 TACGGGA 410 0.0 42.80488 3 TACGCGG 190 0.0 42.63158 1 ACGGGTA 240 0.0 41.250004 4 ATTGCGG 530 0.0 40.75472 1 CACTTAC 7015 0.0 40.734142 36 GCACTTA 7035 0.0 40.586357 35 CGCACTT 7060 0.0 40.538246 34 ACTTACT 7010 0.0 40.345936 37 ACCCGCA 7205 0.0 40.222065 31 CTTACTG 7015 0.0 40.18888 38 TACGGGT 140 0.0 40.17857 3 CACGACG 690 0.0 40.108696 25 TATCGGA 45 1.9301297E-8 40.0 41 CCGCACT 7160 0.0 39.940643 33 TCGGCGT 2395 0.0 39.832985 4 AGGGCGC 1510 0.0 39.784767 5 CCCGCAC 7330 0.0 39.751022 32 ACTACGG 210 0.0 39.642857 1 >>END_MODULE