SRR1043382_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043382_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2603862
Sequences flagged as poor quality	0
Sequence length	52
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	106020	4.071644349815774	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	17236	0.6619398416659562	No Hit
CCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGCT	10877	0.41772567056165033	TruSeq Adapter, Index 27 (96% over 26bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	10649	0.4089694461534444	No Hit
CTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGCTT	9969	0.3828543909009003	TruSeq Adapter, Index 27 (100% over 26bp)
GCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGCT	7726	0.29671311306052317	TruSeq Adapter, Index 27 (96% over 26bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	5109	0.1962085548312468	No Hit
CGCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC	4605	0.17685269034994944	TruSeq Adapter, Index 27 (100% over 24bp)
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4491	0.17247457814584644	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCG	3901	0.14981592726496257	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3622	0.1391010737128158	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA	3382	0.1298839953883885	No Hit
TCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGCT	3349	0.1286166471187797	TruSeq Adapter, Index 27 (96% over 26bp)
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3062	0.11759455762248537	No Hit
GCCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC	2753	0.10572756927978517	TruSeq Adapter, Index 27 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAG	20	6.3129334E-4	46.0	10
CGTACAC	20	6.3129334E-4	46.0	46
CGTTTTT	24920	0.0	45.32624	1
ATTGCGG	480	0.0	43.125	1
ACGGGTA	140	0.0	42.714287	4
ATGACGG	245	0.0	42.2449	1
CTAGCGG	640	0.0	42.046875	1
TACGGGA	570	0.0	41.96491	3
ACGTAGG	225	0.0	41.91111	1
ACTACGG	160	0.0	41.6875	1
ACATACG	320	0.0	41.6875	16
CCCGCAC	4940	0.0	41.57692	32
ACCCGCA	4945	0.0	41.395348	31
CCGCACT	4820	0.0	41.37137	33
GTCGGCG	1570	0.0	41.312103	3
CGCACTT	4835	0.0	41.19545	34
TAGTAGG	520	0.0	41.134613	1
CATACGA	325	0.0	41.046154	17
GCGCGAC	1935	0.0	41.007748	8
GCACTTA	4825	0.0	40.899483	35