##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043381_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2563143 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26954407147787 33.0 31.0 34.0 31.0 34.0 2 32.555413022215305 34.0 31.0 34.0 31.0 34.0 3 32.661841340885 34.0 31.0 34.0 31.0 34.0 4 36.150176560574266 37.0 37.0 37.0 35.0 37.0 5 36.1371788464397 37.0 37.0 37.0 35.0 37.0 6 36.30551982468399 37.0 37.0 37.0 35.0 37.0 7 36.25037502784667 37.0 37.0 37.0 35.0 37.0 8 36.14829956814739 37.0 37.0 37.0 35.0 37.0 9 37.73657458830818 39.0 38.0 39.0 35.0 39.0 10 37.54858273611734 39.0 37.0 39.0 35.0 39.0 11 37.25651280478694 39.0 37.0 39.0 35.0 39.0 12 37.248876086898 39.0 37.0 39.0 34.0 39.0 13 37.19619584237009 39.0 37.0 39.0 34.0 39.0 14 38.50280963645025 40.0 37.0 41.0 34.0 41.0 15 38.60464398591885 40.0 38.0 41.0 35.0 41.0 16 38.52540143097752 40.0 38.0 41.0 34.0 41.0 17 38.473795648545554 40.0 37.0 41.0 34.0 41.0 18 38.31946754433912 40.0 37.0 41.0 34.0 41.0 19 38.16220827320208 40.0 37.0 41.0 34.0 41.0 20 37.909434627720735 40.0 35.0 41.0 34.0 41.0 21 37.85524763932406 40.0 35.0 41.0 34.0 41.0 22 37.83816002462601 40.0 35.0 41.0 34.0 41.0 23 37.809867416683346 40.0 35.0 41.0 34.0 41.0 24 37.73390208817846 40.0 35.0 41.0 34.0 41.0 25 37.69589211370571 40.0 35.0 41.0 34.0 41.0 26 37.668983353640435 40.0 35.0 41.0 34.0 41.0 27 37.64046172999321 39.0 35.0 41.0 34.0 41.0 28 37.571393012407036 39.0 35.0 41.0 34.0 41.0 29 37.53612459390678 39.0 35.0 41.0 34.0 41.0 30 37.44338610838334 39.0 35.0 41.0 33.0 41.0 31 37.352973283191766 40.0 35.0 41.0 33.0 41.0 32 37.150009968230414 39.0 35.0 41.0 33.0 41.0 33 36.81357770518461 39.0 35.0 41.0 32.0 41.0 34 36.59062135823089 39.0 35.0 41.0 31.0 41.0 35 36.47747160419844 39.0 35.0 41.0 31.0 41.0 36 36.43436047071896 39.0 35.0 41.0 31.0 41.0 37 36.3442820006531 39.0 35.0 41.0 31.0 41.0 38 36.257025066490634 39.0 35.0 41.0 31.0 41.0 39 36.194857641575204 39.0 35.0 41.0 31.0 41.0 40 36.11247441129894 38.0 35.0 41.0 31.0 41.0 41 36.0264792093145 38.0 35.0 41.0 31.0 41.0 42 35.91305830380904 38.0 35.0 41.0 30.0 41.0 43 35.787187839305105 38.0 35.0 40.0 30.0 41.0 44 35.658273065529315 38.0 35.0 40.0 30.0 41.0 45 35.600336383884944 38.0 35.0 40.0 30.0 41.0 46 35.50631119683919 37.0 35.0 40.0 29.0 41.0 47 35.374508952485286 37.0 35.0 40.0 29.0 41.0 48 35.32548788733207 37.0 35.0 40.0 29.0 41.0 49 35.27066105948829 37.0 35.0 40.0 29.0 41.0 50 35.198625671685114 37.0 35.0 40.0 29.0 41.0 51 34.8217766234658 36.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 5.0 13 8.0 14 14.0 15 48.0 16 85.0 17 238.0 18 435.0 19 862.0 20 1564.0 21 2627.0 22 4054.0 23 6338.0 24 10241.0 25 17458.0 26 28099.0 27 35501.0 28 39054.0 29 40556.0 30 44033.0 31 50211.0 32 59623.0 33 78337.0 34 179649.0 35 247217.0 36 226342.0 37 237065.0 38 380389.0 39 872820.0 40 267.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.04750690851037 18.257272419057383 23.824616886377388 26.870603786054854 2 34.16013074572897 20.146788532672584 24.787809341890014 20.905271379708427 3 27.0840136504284 20.623663993776393 32.55924464612392 19.73307770967129 4 23.296398211102538 23.79258589942114 30.532319109780452 22.37869677969587 5 21.30801909998779 32.051196519273404 27.6952163808262 18.94556799991261 6 78.64886976653273 2.167456127106447 16.012684426893074 3.170989679467747 7 78.73852531832988 2.10120933556965 14.254179341534984 4.906086004565489 8 68.78937304707542 3.7516049631253505 19.967399399877415 7.491622589921826 9 40.07884070455687 17.354864711020806 23.974159849840607 18.592134734581723 10 28.891833190734967 15.97729818429951 34.57766499957279 20.55320362539273 11 26.226121601486923 13.543684453032858 37.369237689820665 22.860956255659556 12 22.44135422799274 15.614540429464919 39.94747854489586 21.99662679764648 13 17.643182608227477 19.378630064729123 41.454651574258634 21.523535752784763 14 17.275743101340815 18.84268649856836 41.32703481623928 22.554535583851546 15 21.102997374707535 15.351191876535955 41.282753244746786 22.263057504009726 16 20.492067746512777 19.24005020398784 36.38954205832449 23.878339991174897 17 20.87421575776303 20.12696911565215 36.815425436661165 22.18338968992366 18 21.422956112866117 25.953799690458162 34.0397316887899 18.58351250788583 19 23.08521217895373 21.186605663437426 31.64638102517105 24.081801132437793 20 21.36263954059528 25.67675701277689 33.86190314001208 19.098700306615747 21 19.394001817300087 20.26129638494614 35.13307685135008 25.211624946403692 22 20.450439167849783 22.333010682587744 32.29644229760103 24.92010785196144 23 20.694085347559618 20.675904543757408 36.06743751714204 22.562572591540935 24 24.957991028982775 18.643282875750593 32.10737754389825 24.291348551368376 25 18.102384455334718 20.44271427696387 34.395466815546385 27.059434452155028 26 16.840769321103036 19.831862677969976 35.14302557446073 28.18434242646626 27 21.023992808828847 21.54979257887679 34.188572389445305 23.237642222849058 28 21.050951897728687 22.813982676737115 30.210682743803215 25.924382681730982 29 21.45143677118288 19.253861372541444 32.42203029639782 26.872671559877855 30 23.906157401284283 21.56219922181478 30.76625065398224 23.765392722918698 31 24.047390254855074 18.68873488525611 29.565420267226607 27.698454592662213 32 22.598544053141005 19.90661465240137 28.70514832765866 28.789692966798963 33 17.73494494844806 20.530419098739323 34.411540830925155 27.323095121887462 34 17.945389703188624 21.89113131807316 32.174638715046335 27.988840263691884 35 19.57136219087269 22.8196007791996 32.25832503297709 25.35071199695062 36 19.557863139122553 21.42935450733728 31.172548702901086 27.840233650639078 37 19.34086393150909 23.507506214050483 35.14158203424467 22.01004782019575 38 18.42690790174407 19.66054956746463 32.8745996614313 29.037942869360002 39 21.0939850020073 17.4586045335746 36.04558934089904 25.401821123519053 40 16.904753265814666 18.027203320298554 37.12754224013253 27.940501173754257 41 18.769690181156495 22.585552191196513 30.512889838764362 28.131867788882637 42 18.4223431934933 17.523446799495776 32.61530862694747 31.43890138006346 43 20.981193792152837 18.519528563174198 33.1115353298665 27.387742314806466 44 20.473730884308836 19.53562481687522 32.74191100535553 27.248733293460415 45 20.987163026019225 20.13184594070639 33.23400216062857 25.64698887264581 46 21.36974019787425 18.939715809847517 32.72131129632642 26.969232695951806 47 18.250522893182318 20.370654309962415 35.30388277204978 26.074940024805482 48 20.19594692921932 18.44095315790028 31.468396417991507 29.89470349488889 49 19.45404528736789 16.54753558424169 36.69260747449518 27.305811653895233 50 19.14961436018201 16.492329924627693 37.451597511336665 26.906458203853628 51 17.76721002300691 15.845194747230257 34.88439778818427 31.50319744157856 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 567.0 1 4257.5 2 7948.0 3 69434.0 4 130920.0 5 74286.0 6 17652.0 7 15738.0 8 13824.0 9 13488.5 10 13153.0 11 12845.5 12 12538.0 13 11790.5 14 11043.0 15 10165.5 16 9288.0 17 8951.0 18 8614.0 19 7735.0 20 6856.0 21 6724.5 22 6593.0 23 6641.0 24 6689.0 25 7029.5 26 8038.0 27 8706.0 28 9746.5 29 10787.0 30 12907.5 31 15028.0 32 17501.0 33 19974.0 34 23668.5 35 27363.0 36 30340.5 37 33318.0 38 36502.5 39 39687.0 40 45867.0 41 52047.0 42 63100.0 43 74153.0 44 88855.5 45 103558.0 46 136516.5 47 169475.0 48 225250.5 49 281026.0 50 296812.5 51 312599.0 52 268177.5 53 223756.0 54 199333.0 55 174910.0 56 158727.0 57 142544.0 58 134077.0 59 125610.0 60 121732.0 61 117854.0 62 111517.0 63 105180.0 64 101498.0 65 97816.0 66 79303.0 67 60790.0 68 49286.0 69 37782.0 70 31427.0 71 25072.0 72 23576.0 73 22080.0 74 18408.0 75 11250.0 76 7764.0 77 5761.0 78 3758.0 79 2623.5 80 1489.0 81 1107.5 82 726.0 83 496.0 84 266.0 85 178.0 86 90.0 87 76.5 88 63.0 89 53.0 90 43.0 91 32.5 92 22.0 93 15.5 94 9.0 95 8.0 96 7.0 97 3.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2563143.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.605624254015247 #Duplication Level Percentage of deduplicated Percentage of total 1 71.2597901716261 18.959112017262523 2 11.903014485081163 6.333742617603404 3 4.624150011757646 3.690851931210723 4 2.3707485491986686 2.5230098040292623 5 1.382595453568311 1.8392407566474132 6 0.9121108457140906 1.4560367063448698 7 0.6417750369122383 1.1952377841385644 8 0.49263597802867204 1.0485510180352127 9 0.4215425417143208 1.009386222474039 >10 5.227335064868831 32.41006283168145 >50 0.5701049901479589 9.872640522371109 >100 0.1779038249899281 8.647192088993906 >500 0.009627709231682467 1.7765860062454897 >1k 0.00577662553900948 3.1777331481659536 >5k 4.4435581069303685E-4 1.024289593947313 >10k+ 4.4435581069303685E-4 5.036326950848976 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 100804 3.9328277821409108 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 16545 0.6454965641792129 No Hit CCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC 10451 0.407741589134902 TruSeq Adapter, Index 27 (96% over 25bp) CTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGCT 9317 0.36349903224283625 TruSeq Adapter, Index 27 (100% over 25bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 8879 0.3464106372527791 No Hit GCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC 7796 0.30415782498284333 TruSeq Adapter, Index 27 (96% over 25bp) GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4948 0.1930442429470381 No Hit CGCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG 4575 0.17849179698518577 TruSeq Adapter, Index 27 (100% over 23bp) GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4481 0.17482442454439726 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCC 3648 0.14232526238294158 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3461 0.13502953210179847 No Hit TCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC 3362 0.13116708665884033 TruSeq Adapter, Index 27 (96% over 25bp) CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 3268 0.1274997142180518 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2889 0.11271318065359599 No Hit GCCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG 2733 0.10662690298590442 TruSeq Adapter, Index 27 (95% over 24bp) GGGCCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTC 2594 0.10120387352558949 TruSeq Adapter, Index 27 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3758276459799551 0.0 2 0.0 0.0 0.0 1.322672983910769 0.0 3 0.0 0.0 0.0 2.135230067148029 0.0 4 0.0 0.0 0.0 2.676557648168674 0.0 5 0.0 0.0 0.0 5.540268334618864 0.0 6 0.0 0.0 0.0 6.334020380446975 0.0 7 0.0 0.0 0.0 8.849525758024425 0.0 8 0.0 0.0 0.0 11.679996004904915 0.0 9 0.0 0.0 0.0 14.146928204942135 0.0 10 0.0 0.0 0.0 15.708136455905894 0.0 11 0.0 0.0 0.0 17.110555283103597 0.0 12 0.0 0.0 0.0 18.12540306959073 0.0 13 0.0 0.0 0.0 18.613319662617343 0.0 14 0.0 0.0 0.0 18.94221274427529 0.0 15 0.0 0.0 0.0 19.915353922898568 0.0 16 0.0 0.0 0.0 20.947953352583138 0.0 17 0.0 0.0 0.0 22.246125167421404 0.0 18 0.0 0.0 0.0 22.955878778515284 0.0 19 0.0 0.0 0.0 23.7457293643 0.0 20 0.0 0.0 0.0 24.6540282770021 0.0 21 0.0 0.0 0.0 25.504624595662435 0.0 22 0.0 0.0 0.0 26.317883941707507 0.0 23 0.0 0.0 0.0 27.061346167576293 0.0 24 1.1704380130176116E-4 0.0 0.0 27.650115502724585 0.0 25 1.1704380130176116E-4 0.0 0.0 28.229716406770905 0.0 26 1.1704380130176116E-4 0.0 0.0 28.810448734229812 0.0 27 1.1704380130176116E-4 0.0 0.0 29.421729493828476 0.0 28 1.1704380130176116E-4 0.0 0.0 30.04268587433475 0.0 29 1.1704380130176116E-4 0.0 0.0 30.646475830650104 0.0 30 1.1704380130176116E-4 0.0 0.0 31.20910538350767 0.0 31 1.1704380130176116E-4 0.0 0.0 31.76849672452922 0.0 32 1.1704380130176116E-4 0.0 0.0 32.421250004389144 0.0 33 1.1704380130176116E-4 0.0 0.0 32.995271820573414 0.0 34 1.1704380130176116E-4 0.0 0.0 33.64759593982856 0.0 35 1.1704380130176116E-4 0.0 0.0 34.1661389941958 0.0 36 1.1704380130176116E-4 0.0 0.0 34.76247716182827 0.0 37 1.1704380130176116E-4 0.0 0.0 35.460214275988506 0.0 38 1.1704380130176116E-4 0.0 0.0 36.27405884104008 0.0 39 1.5605840173568155E-4 0.0 0.0 37.07604296755975 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 23560 0.0 44.12139 1 ACGTAGG 245 0.0 43.163265 1 ACGGGTA 195 0.0 42.69231 4 TCACGAC 420 0.0 40.714283 24 TAGTAGG 565 0.0 40.619465 1 CTAGCGG 640 0.0 40.429688 1 CGCACTT 4715 0.0 40.227997 34 CACGACG 415 0.0 40.120483 25 CCCGCAC 4800 0.0 39.9375 32 CTTGCGG 665 0.0 39.92481 1 ACCCGCA 4825 0.0 39.777203 31 GCACTTA 4770 0.0 39.71698 35 CATATGC 890 0.0 39.691013 32 CGGTCTA 420 0.0 39.642853 30 TATGCAA 125 0.0 39.600002 9 CCGCACT 4785 0.0 39.592476 33 GTTTTTT 27085 0.0 39.475723 2 TTGTAGG 850 0.0 39.441174 1 ATAACGG 120 0.0 39.374996 1 CGACGGT 430 0.0 39.244186 27 >>END_MODULE