##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043380_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 352939 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.143999387996224 33.0 31.0 34.0 30.0 34.0 2 32.44606291738799 34.0 31.0 34.0 31.0 34.0 3 32.50651812352843 34.0 31.0 34.0 31.0 34.0 4 36.05004547528043 37.0 35.0 37.0 35.0 37.0 5 35.915047642793795 37.0 35.0 37.0 35.0 37.0 6 36.218117011721574 37.0 36.0 37.0 35.0 37.0 7 36.1118181895455 37.0 36.0 37.0 35.0 37.0 8 36.084589688303076 37.0 35.0 37.0 35.0 37.0 9 37.694595950008356 39.0 38.0 39.0 35.0 39.0 10 37.55757510504648 39.0 37.0 39.0 35.0 39.0 11 37.10650282343408 39.0 35.0 39.0 34.0 39.0 12 36.939116957887904 39.0 35.0 39.0 33.0 39.0 13 36.97116498885077 39.0 35.0 39.0 33.0 39.0 14 38.37096212093308 40.0 37.0 41.0 34.0 41.0 15 38.48845267879152 40.0 37.0 41.0 34.0 41.0 16 38.52429456648316 40.0 37.0 41.0 34.0 41.0 17 38.55310691082595 40.0 37.0 41.0 35.0 41.0 18 38.28003989357934 40.0 36.0 41.0 34.0 41.0 19 38.02835334151227 40.0 36.0 41.0 34.0 41.0 20 37.70514168170704 39.0 35.0 41.0 34.0 41.0 21 37.63185706311856 39.0 35.0 41.0 34.0 41.0 22 37.59054964172279 39.0 35.0 41.0 34.0 41.0 23 37.61452828959112 39.0 35.0 41.0 34.0 41.0 24 37.53072060611041 39.0 35.0 41.0 34.0 41.0 25 37.45133011653572 39.0 35.0 41.0 33.0 41.0 26 37.39110157845973 39.0 35.0 41.0 33.0 41.0 27 37.44182139123191 39.0 35.0 41.0 33.0 41.0 28 37.42123143092716 39.0 35.0 41.0 33.0 41.0 29 37.347646477153276 39.0 35.0 41.0 33.0 41.0 30 37.23395827607604 39.0 35.0 41.0 33.0 41.0 31 37.10312263592292 39.0 35.0 41.0 33.0 41.0 32 36.91474164090678 39.0 35.0 41.0 32.0 41.0 33 36.70986487750008 39.0 35.0 41.0 31.0 41.0 34 36.546145367896436 39.0 35.0 41.0 31.0 41.0 35 36.44799809598826 39.0 35.0 41.0 31.0 41.0 36 36.40777301460026 39.0 35.0 41.0 31.0 41.0 37 36.396286610434096 39.0 35.0 41.0 31.0 41.0 38 36.35392801588943 39.0 35.0 41.0 31.0 41.0 39 36.31191225679225 39.0 35.0 41.0 31.0 41.0 40 36.22421438265536 39.0 35.0 41.0 31.0 41.0 41 36.22125919776505 39.0 35.0 41.0 31.0 41.0 42 36.060288038442906 39.0 35.0 41.0 30.0 41.0 43 35.87965342452945 38.0 35.0 41.0 29.0 41.0 44 35.692490770359754 38.0 35.0 41.0 28.0 41.0 45 35.6286752101638 38.0 35.0 41.0 28.0 41.0 46 35.577513394665935 38.0 35.0 41.0 28.0 41.0 47 35.41206554107084 38.0 35.0 40.0 28.0 41.0 48 35.39432876502738 38.0 35.0 40.0 28.0 41.0 49 35.227583236763294 37.0 35.0 40.0 28.0 41.0 50 34.790077038808406 37.0 35.0 39.0 27.0 41.0 51 34.51739252392056 36.0 35.0 39.0 27.0 40.0 52 34.125472107078 36.0 34.0 39.0 26.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 3.0 15 2.0 16 14.0 17 25.0 18 63.0 19 137.0 20 251.0 21 413.0 22 727.0 23 1161.0 24 1989.0 25 3311.0 26 4564.0 27 5090.0 28 4959.0 29 5232.0 30 5862.0 31 7072.0 32 8944.0 33 11632.0 34 20893.0 35 43317.0 36 33731.0 37 26385.0 38 44853.0 39 122234.0 40 75.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.760715024409315 19.276702206330274 24.86350332493717 29.099079444323237 2 31.9950473027917 19.957273069850597 28.022406138171185 20.025273489186514 3 20.448576099552614 22.94504149442255 37.78953303545372 18.816849370571116 4 23.180492946373167 23.664145928899895 35.3358512377493 17.819509886977634 5 19.335919238168636 29.81875054896172 30.976174353075177 19.869155859794468 6 71.20833911809122 1.9660621240497649 22.404438160701993 4.421160597157016 7 70.48101796627746 2.0533293288641947 17.70107582330091 9.764576881557437 8 55.5186590317307 3.90662409084856 29.083212679811528 11.491504197609219 9 32.54386735384868 19.250635378918172 28.6854102266964 19.520087040536747 10 27.241251321049813 18.746298935510104 43.71973627170701 10.292713471733075 11 24.86265331969547 13.259798435423686 40.46138284519421 21.416165399686633 12 16.191466514043505 22.9320080807165 44.21698933810092 16.65953606713908 13 9.867994185964147 28.2082739510227 42.135326501180096 19.788405361833064 14 7.560229954751388 21.495215887164637 52.38100634953916 18.56354780854482 15 7.495629556382265 18.278229382414523 53.067810584831946 21.15833047637127 16 7.117093888745647 24.537951317366456 39.497193566026986 28.847761227860907 17 12.13382482525309 21.126313612267275 43.587702124163094 23.152159438316534 18 14.533672957649907 30.153369279110553 39.85277909213774 15.460178671101804 19 15.811514171004054 21.384715205743767 35.95833840975352 26.84543221349865 20 9.89944437990701 34.206477606611905 35.26331745712432 20.630760556356766 21 12.095007919215501 23.736113039363744 34.67454715970749 29.494331881713272 22 8.968121970085482 29.84255069572929 31.573161367828433 29.616165966356796 23 8.98682208540286 22.840207514613006 44.77232609601093 23.40064430397321 24 14.802557949107353 21.46744904926914 40.83623515678347 22.893757844840042 25 10.21054629836884 26.82786543850354 39.44449324104165 23.51709502208597 26 16.622135836504327 23.139126024610484 34.36826193761528 25.87047620126991 27 23.332927219717856 22.7620070323767 39.03875740567067 14.866308342234777 28 15.709513542000176 25.247705694185115 30.911573954706057 28.131206809108654 29 22.644989644102807 23.156976134686165 27.8699718648265 26.328062356384528 30 27.28800160934326 20.638693938612622 25.277455877644577 26.795848574399546 31 25.478907119927243 23.39611094268415 26.84004884696789 24.284933090420722 32 25.136638342603113 20.432425999960333 26.7717650925514 27.659170564885148 33 21.944868660023403 22.002952351539502 29.866067507416293 26.186111481020802 34 18.312796262243616 21.642266793978564 34.51077948314015 25.534157460637672 35 19.356036028888845 20.20320791978217 33.312838762505706 27.127917288823284 36 17.365040417749242 24.478450950447527 30.931690745426266 27.224817886376968 37 14.150037258563094 21.536299473846757 42.214376988658096 22.099286278932055 38 12.352276172369729 24.131082141673208 37.62519868872525 25.891442997231817 39 22.209786960352922 21.83096795763574 36.85367726434313 19.10556781766821 40 14.273288018609447 18.493564043644938 40.704201009239554 26.52894692850606 41 22.856640949285854 21.774867611683604 31.52017770776253 23.848313731268007 42 22.000119000733836 16.87798741425572 36.292673804821796 24.829219780188645 43 24.28833311138752 23.128075956468397 31.66609527425419 20.91749565788989 44 14.542173010066895 22.910757949674025 35.30865107001493 27.23841797024415 45 19.769988581596255 20.33382539192325 34.60824675085497 25.287939275625533 46 24.081215167493532 16.031665528604094 36.23600678870853 23.651112515193844 47 16.322650656345715 15.0731429510482 40.717517758026176 27.886688634579915 48 17.661692247102188 14.92325869342861 32.657201386075215 34.75784767339399 49 20.261008276217705 13.480799798265423 41.81005782868994 24.44813409682693 50 18.634948248847536 14.451222449205103 38.43242033325872 28.481408968688644 51 16.023448811267667 12.336976078019148 39.68617806476473 31.95339704594845 52 14.404188825831094 11.980823881747272 50.067008746553945 23.5479785458677 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 133.0 1 501.0 2 869.0 3 11274.5 4 21680.0 5 11738.0 6 1796.0 7 1800.0 8 1804.0 9 2065.5 10 2327.0 11 2394.0 12 2461.0 13 2378.5 14 2113.0 15 1930.0 16 1780.0 17 1630.0 18 1503.5 19 1377.0 20 1300.5 21 1224.0 22 1137.0 23 1050.0 24 1084.5 25 1119.0 26 1151.0 27 1183.0 28 1180.5 29 1178.0 30 1224.5 31 1271.0 32 1500.0 33 1729.0 34 2157.5 35 2586.0 36 2980.5 37 3375.0 38 3684.5 39 4665.0 40 5336.0 41 9489.5 42 13643.0 43 19195.5 44 24748.0 45 33771.0 46 42794.0 47 52315.0 48 61836.0 49 61990.5 50 62145.0 51 51979.5 52 41814.0 53 30643.0 54 19472.0 55 14417.0 56 9362.0 57 7169.5 58 4977.0 59 4165.5 60 3354.0 61 2836.0 62 2318.0 63 1994.0 64 1306.0 65 942.0 66 681.5 67 421.0 68 389.0 69 357.0 70 313.0 71 269.0 72 243.5 73 218.0 74 170.0 75 122.0 76 87.5 77 53.0 78 49.5 79 46.0 80 32.0 81 18.0 82 12.5 83 7.0 84 4.0 85 1.0 86 1.5 87 2.0 88 1.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 352939.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.861944863052948 #Duplication Level Percentage of deduplicated Percentage of total 1 71.83039890181813 20.73165012595374 2 11.49927555136335 6.637829138570036 3 4.679862096697301 4.052097654047065 4 2.5204721076626484 2.9098290800088877 5 1.5020495805959357 2.167603608836585 6 1.0013644432728246 1.734079520973718 7 0.7105489202427462 1.4355476630983561 8 0.5466529610925578 1.2621974097822424 9 0.43972084588310256 1.1422078928111796 >10 4.6210663437327 28.386173625354406 >50 0.42373099691650745 8.360038778599854 >100 0.209866767340723 10.178341444218592 >500 0.006995558911357433 1.3074819135865696 >1k 0.006995558911357433 3.7888997169365055 >5k 0.0 0.0 >10k+ 9.993655587653477E-4 5.906022427222282 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20476 5.801569109676176 No Hit CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT 3426 0.970705986020247 TruSeq Adapter, Index 23 (95% over 23bp) CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCTT 3142 0.8902388231394094 TruSeq Adapter, Index 20 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT 2286 0.6477039941746308 TruSeq Adapter, Index 23 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 1098 0.3111019184618305 TruSeq Adapter, Index 20 (95% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCG 1089 0.30855190273673355 No Hit TCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT 1065 0.30175186080314165 TruSeq Adapter, Index 23 (95% over 23bp) ACCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 1030 0.2918351329833201 TruSeq Adapter, Index 20 (95% over 23bp) GCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 863 0.24451817452874292 TruSeq Adapter, Index 23 (95% over 22bp) CGGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG 816 0.23120142574212543 TruSeq Adapter, Index 20 (95% over 22bp) ACTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT 613 0.17368440438716037 TruSeq Adapter, Index 20 (95% over 24bp) AGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 609 0.17255106406489507 TruSeq Adapter, Index 20 (95% over 23bp) CGTTCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCT 566 0.16036765560054286 TruSeq Adapter, Index 20 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 554 0.1569676346337469 TruSeq Adapter, Index 20 (95% over 23bp) TGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCTTG 512 0.14506756124996106 TruSeq Adapter, Index 23 (96% over 25bp) AGAGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCT 497 0.14081753504146607 No Hit ATCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 476 0.13486749834957315 TruSeq Adapter, Index 20 (95% over 23bp) GGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 470 0.1331674878661752 TruSeq Adapter, Index 23 (95% over 22bp) TGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 408 0.11560071287106272 TruSeq Adapter, Index 20 (95% over 23bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCC 402 0.11390070238766473 No Hit GTCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC 398 0.11276736206539939 TruSeq Adapter, Index 23 (95% over 22bp) ATAGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCT 390 0.11050068142086876 No Hit GCAGAGAATATCAACTGTCTCTTATACACATCTGACGCGGACCTTATCGTAT 385 0.10908400601803711 No Hit CGTCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTG 368 0.10426730964840951 TruSeq Adapter, Index 20 (95% over 22bp) CGTTTTTCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCT 353 0.10001728343991453 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.9228223574045373 0.0 2 0.0 0.0 0.0 3.0784356503531773 0.0 3 0.0 0.0 0.0 5.036281057066518 0.0 4 0.0 0.0 0.0 6.507073460286338 0.0 5 0.0 0.0 0.0 13.206248105196648 0.0 6 0.0 0.0 0.0 14.547273041517089 0.0 7 0.0 0.0 0.0 20.85629528048756 0.0 8 0.0 0.0 0.0 27.85920513176498 0.0 9 0.0 0.0 0.0 33.781474985762415 0.0 10 0.0 0.0 0.0 36.42924131365477 0.0 11 0.0 0.0 0.0 39.19289168949875 0.0 12 0.0 0.0 0.0 41.321021479632456 0.0 13 0.0 0.0 0.0 42.06250938547454 0.0 14 5.666701611326603E-4 0.0 0.0 42.609062755886995 0.0 15 5.666701611326603E-4 0.0 0.0 44.55670809969995 0.0 16 5.666701611326603E-4 0.0 0.0 46.61173743904754 0.0 17 5.666701611326603E-4 0.0 0.0 50.13472583080929 0.0 18 5.666701611326603E-4 0.0 0.0 51.13829868617523 0.0 19 5.666701611326603E-4 0.0 0.0 52.7374418808916 0.0 20 5.666701611326603E-4 0.0 0.0 53.793998396323445 0.0 21 5.666701611326603E-4 0.0 0.0 54.61425345456297 0.0 22 0.001416675402831651 0.0 0.0 55.54727587486789 0.0 23 0.001416675402831651 0.0 0.0 56.1269794497066 0.0 24 0.007650047175290915 0.0 0.0 56.617432474166925 0.0 25 0.007650047175290915 0.0 0.0 57.09881877604912 0.0 26 0.007650047175290915 0.0 0.0 57.62213866985513 0.0 27 0.008500052416989905 0.0 0.0 58.05620801328275 0.0 28 0.009066722578122565 0.0 0.0 58.51011081235001 0.0 29 0.009066722578122565 0.0 0.0 59.15469812063841 0.0 30 0.009066722578122565 0.0 0.0 59.66243458501327 0.0 31 0.009066722578122565 0.0 0.0 60.041820257891594 0.0 32 0.009066722578122565 0.0 0.0 60.41865591504481 0.0 33 0.009066722578122565 0.0 0.0 60.76914140970536 0.0 34 0.009066722578122565 0.0 0.0 61.283677916013815 0.0 35 0.009066722578122565 0.0 0.0 61.63076338970757 0.0 36 0.009633392739255226 0.0 0.0 61.95234870615035 0.0 37 0.009633392739255226 0.0 0.0 62.26486730001502 0.0 38 0.009633392739255226 0.0 0.0 62.59098597774686 0.0 39 0.009633392739255226 0.0 0.0 62.94260481272968 0.0 40 0.009633392739255226 0.0 0.0 63.297340333598726 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGGATG 145 0.0 46.000004 5 CTTAATC 30 1.857712E-6 46.0 10 CTTAAGG 40 5.5915734E-9 46.0 1 GAAATTG 25 3.412312E-5 46.0 45 AGACTGG 40 5.5915734E-9 46.0 1 GGCAGGT 30 1.857712E-6 46.0 20 AGCCGAA 20 6.3054817E-4 46.0 36 GTCGCAG 25 3.412312E-5 46.0 39 TCGCAGT 25 3.412312E-5 46.0 40 TCCGCGG 20 6.3054817E-4 46.0 1 ATGATCG 25 3.412312E-5 46.0 26 TTAATCA 30 1.857712E-6 46.0 11 ATTAGAC 40 5.5915734E-9 46.0 31 TACTTGG 20 6.3054817E-4 46.0 1 GTCTGCA 20 6.3054817E-4 46.0 8 AAATAGG 30 1.857712E-6 46.0 1 ACGTTTT 50 1.6370905E-11 46.0 28 CAACGCA 30 1.857712E-6 46.0 16 GGATGGA 20 6.3054817E-4 46.0 8 ACGTTGG 25 3.412312E-5 46.0 1 >>END_MODULE