SRR1043378_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043378_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2915973
Sequences flagged as poor quality	0
Sequence length	52
%GC	45

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	199646	6.846634039478418	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	15115	0.5183518503086276	No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	13680	0.46914014635937984	Illumina Single End Adapter 1 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	11738	0.40254145014374276	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCTT	11023	0.3780213328449886	Illumina Single End Adapter 1 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCT	10507	0.36032569574546813	No Hit
CGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	10285	0.35271245652823263	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTC	9895	0.3393378470925485	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTT	7215	0.24743027456015537	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCG	6260	0.21467962837790336	No Hit
GGGCCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCT	5032	0.17256675559067247	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	4914	0.16852007888961937	Illumina Single End Adapter 1 (95% over 21bp)
CGTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG	4830	0.1656393937803951	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCT	4686	0.16070107645029635	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3958	0.13573513883701943	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3510	0.12037148492115668	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTC	2981	0.10223002750711341	No Hit
AGGCCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCT	2945	0.10099544817458873	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	47155	45.42445	1
ACTACGG	180	43.444447	1
CGGTCTA	395	43.088608	30
TACGGGA	260	42.46154	3
TAGTAGG	640	42.046875	1
GTTTTTT	51785	41.776188	2
TCACGAC	435	41.770115	24
CACGACG	420	41.61905	25
GTCGGCG	1830	41.475407	3
GCACTTA	3950	41.34177	35
CGCACTT	3965	41.18537	34
CTTCTTA	1855	41.164417	18
CACTTAC	3970	41.075565	36
GCGATAG	230	41.0	8
CGTTCTG	1175	40.91064	1
CGTTCAG	1535	40.905537	38
CCCGCAC	4030	40.86352	32
ACTTACT	3890	40.856045	37
ACCCGCA	4020	40.850742	31
GGCGATA	480	40.729168	7

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content