SRR1043377_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043377_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2853005
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	189272	6.6341278756959765	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	14402	0.5048010781614474	No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	13020	0.4563609247092101	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	10888	0.38163269955713364	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG	10128	0.35499412023462984	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	10084	0.3534518866949059	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTC	9793	0.3432521148753683	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTT	9330	0.3270236119460008	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCT	6879	0.241114193630926	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCC	5656	0.19824711137905474	No Hit
GGGCCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTC	5049	0.17697129868331812	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	4811	0.16862921726390245	No Hit
CGTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCT	4695	0.16456332884099398	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTC	4240	0.14861523200975812	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3847	0.13484028243904234	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3433	0.12032926686073105	No Hit
AGGCCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTC	2973	0.10420591621816296	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	44545	44.43428	1
CGCACTT	3740	41.991978	34
AATGCGG	265	41.603775	1
ACCCGCA	3900	41.480774	31
GCACTTA	3770	41.47878	35
CCGCACT	3790	41.319263	33
GTTTTTT	48545	41.009373	2
ACGTAGG	220	40.90909	1
CCCGCAC	3990	40.82707	32
CACTTAC	3850	40.79221	36
TAGTAGG	670	40.63433	1
CTTACGG	255	40.588234	1
TTATGAC	4485	40.183945	26
ACTTACT	3840	40.136723	37
CTTACTG	3825	40.117645	38
ATAGCGG	320	40.07813	1
CAACGCA	4690	40.010662	16
TATACGG	180	40.0	1
AACGCAA	4675	39.99465	17
CTTATGA	4515	39.916943	25