##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043377_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2853005 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.31617750407027 33.0 31.0 34.0 31.0 34.0 2 32.6161191445511 34.0 31.0 34.0 31.0 34.0 3 32.6724243385483 34.0 31.0 34.0 31.0 34.0 4 36.19073187744151 37.0 37.0 37.0 35.0 37.0 5 36.17850126445625 37.0 37.0 37.0 35.0 37.0 6 36.34922511527319 37.0 37.0 37.0 35.0 37.0 7 36.296631446492384 37.0 37.0 37.0 35.0 37.0 8 36.20623272654622 37.0 37.0 37.0 35.0 37.0 9 37.85996624611594 39.0 38.0 39.0 35.0 39.0 10 37.693417291592546 39.0 38.0 39.0 35.0 39.0 11 37.44639774553497 39.0 37.0 39.0 35.0 39.0 12 37.45573491809513 39.0 37.0 39.0 35.0 39.0 13 37.45098098320893 39.0 37.0 39.0 35.0 39.0 14 38.729846950846564 40.0 38.0 41.0 35.0 41.0 15 38.826838368667424 41.0 38.0 41.0 35.0 41.0 16 38.78339785594487 41.0 38.0 41.0 35.0 41.0 17 38.69155995170005 41.0 38.0 41.0 34.0 41.0 18 38.44191229948773 40.0 38.0 41.0 34.0 41.0 19 38.166451162896664 40.0 37.0 41.0 34.0 41.0 20 37.762205814570954 40.0 35.0 41.0 34.0 41.0 21 37.729540256676735 39.0 35.0 41.0 34.0 41.0 22 37.72705060103294 39.0 35.0 41.0 34.0 41.0 23 37.7136664674615 39.0 35.0 41.0 34.0 41.0 24 37.64756037931935 39.0 35.0 41.0 34.0 41.0 25 37.62720535014835 39.0 35.0 41.0 34.0 41.0 26 37.61011424795961 39.0 35.0 41.0 34.0 41.0 27 37.58091731349928 39.0 35.0 41.0 34.0 41.0 28 37.5043920357658 39.0 35.0 41.0 34.0 41.0 29 37.4596486862098 39.0 35.0 41.0 34.0 41.0 30 37.35381150751576 39.0 35.0 41.0 34.0 41.0 31 37.1888945164835 39.0 35.0 41.0 33.0 41.0 32 36.89417579008799 39.0 35.0 41.0 33.0 41.0 33 36.358837085809526 39.0 35.0 41.0 31.0 41.0 34 36.04695890823886 39.0 35.0 41.0 30.0 41.0 35 35.839223205006654 39.0 35.0 41.0 29.0 41.0 36 35.68342712333136 38.0 35.0 41.0 29.0 41.0 37 35.55307894658439 38.0 35.0 41.0 28.0 41.0 38 35.38452158338313 38.0 35.0 41.0 27.0 41.0 39 35.26638298916406 38.0 35.0 40.0 26.0 41.0 40 35.15267340926497 38.0 35.0 40.0 26.0 41.0 41 35.09162234205689 38.0 35.0 40.0 25.0 41.0 42 35.01798104104269 37.0 35.0 40.0 25.0 41.0 43 34.899578164076125 37.0 35.0 40.0 24.0 41.0 44 34.80464072092408 37.0 35.0 40.0 23.0 41.0 45 34.7568139558115 37.0 35.0 40.0 23.0 41.0 46 34.67727080744689 37.0 35.0 40.0 23.0 41.0 47 34.54386515270741 36.0 35.0 40.0 23.0 41.0 48 34.458930496090964 36.0 34.0 40.0 23.0 41.0 49 34.388330199211005 36.0 34.0 40.0 23.0 41.0 50 34.30871204221514 36.0 34.0 40.0 23.0 41.0 51 33.90491464263119 35.0 34.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 1.0 12 3.0 13 11.0 14 26.0 15 37.0 16 97.0 17 197.0 18 442.0 19 855.0 20 1672.0 21 2975.0 22 4586.0 23 7409.0 24 12912.0 25 24774.0 26 42205.0 27 55374.0 28 58284.0 29 57058.0 30 56890.0 31 60499.0 32 68932.0 33 87865.0 34 188759.0 35 254023.0 36 296592.0 37 259115.0 38 399219.0 39 912031.0 40 160.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.8162165856702 15.912625459822188 22.278509851893006 34.99264810261461 2 39.45131536748095 17.565268900685417 22.618782651975724 20.364633079857906 3 24.071426443346578 19.370137802071852 37.72120974200887 18.837226012572707 4 21.533681153730893 21.813281084330384 36.35426506437949 20.29877269755924 5 20.17420228846427 28.851333944384955 33.14459666211591 17.829867105034864 6 72.5124912154027 1.7045185690175795 22.244125054109613 3.538865161470099 7 71.30709550105941 1.6400251664473071 20.979528602298277 6.0733507301950045 8 61.122746016919 3.0813125108438295 27.12876423280015 8.667177239437015 9 37.58945392664927 13.874003024880786 30.514457563165852 18.022085485304093 10 25.93518062534065 13.002045211978247 40.92376283953235 20.13901132314875 11 23.558283283765714 10.479091344039004 43.44955581921518 22.513069552980102 12 20.90045408262516 11.457603474231556 45.88751158865828 21.75443085448501 13 16.477433442983802 14.19159798177711 46.64254005863992 22.688428516599167 14 14.66523893228368 15.331378669157608 48.501281981629894 21.50210041692882 15 17.77175294119709 14.363241564595928 46.68260307991048 21.182402414296504 16 18.1187204368727 18.40396354019709 43.641248438050404 19.836067584879803 17 17.470106081132002 19.42260879318473 43.95989491781472 19.147390207868543 18 18.76901722920219 25.884952883012822 38.94034535516061 16.405684532624374 19 19.696635652583854 21.432559704592176 37.349776814271266 21.521027828552704 20 18.133196401688746 26.2820079179672 37.01038028324521 18.574415397098846 21 17.2242600345951 20.89712426020985 37.3661455202497 24.512470184945347 22 18.42849907378361 22.462841810652275 35.421669432755984 23.686989682808125 23 18.25401637922121 19.523800343847977 38.78762918396568 23.434554092965136 24 21.745037250197598 18.08118107048533 36.690436925277034 23.48334475404004 25 16.261310442848856 17.568879129198862 40.58440135926856 25.585409068683724 26 16.348341485556457 17.34168008818772 40.55765762765925 25.752320798596568 27 20.368874222092145 18.731127355192157 39.73512138955242 21.16487703316328 28 22.39000632666259 20.522606865392806 34.52335344662908 22.564033361315524 29 21.186328099670348 18.17266356000077 37.758188296199975 22.88282004412891 30 24.175702461089273 16.404597958994113 35.670494794085535 23.74920478583108 31 24.945417200460568 17.56901933224793 35.48395463730347 22.001608829988033 32 24.823545700060112 16.177048410360303 37.86684565922597 21.132560230353608 33 18.796146519196427 18.691730298404664 42.18499441816611 20.3271287642328 34 22.802308443202868 21.699155802390813 36.90964439249142 18.588891361914893 35 26.102442862876163 22.52852693913961 32.29044463644473 19.078585561539498 36 27.85382430104399 19.489836155211783 31.852240006589543 20.804099537154684 37 26.76451671132718 21.57251739832212 32.085888387857715 19.577077502492983 38 26.681691760091553 17.36172912420413 33.570007763743845 22.386571351960477 39 26.130869031074255 15.605791086941665 39.126885511942675 19.136454370041413 40 20.339116124927926 15.504284079418017 42.17430393567484 21.982295859979214 41 21.727511869064372 19.505433744420355 35.68307801773919 23.083976368776078 42 20.527584073634642 15.816691523498907 37.59194253077019 26.063781872096264 43 22.806794940772974 18.051002364173915 37.95468286946571 21.187519825587405 44 22.2083031750733 18.658607328062867 37.64998659308343 21.4831029037804 45 22.17419878338804 19.79695093419044 36.0519872905936 21.976862991827915 46 23.18036596500882 17.929551472920657 35.92871375970249 22.96136880236803 47 21.963017940732666 17.667862481839325 36.282270798684195 24.086848778743818 48 22.465961328493993 15.884970408393956 33.8928953857424 27.75617287736965 49 21.540516052372848 15.027768966405597 38.041118049214774 25.39059693200678 50 21.69631669064723 13.860508481408198 39.88878393132855 24.554390896616024 51 19.448441204975104 13.31631034645926 40.0104451271554 27.224803321410235 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 703.0 1 3918.0 2 7133.0 3 127260.0 4 247387.0 5 140672.0 6 33957.0 7 30106.5 8 26256.0 9 24953.5 10 23651.0 11 22752.5 12 21854.0 13 20604.5 14 19355.0 15 18005.0 16 16655.0 17 15549.5 18 14444.0 19 13385.0 20 12326.0 21 11506.0 22 10686.0 23 10294.0 24 9902.0 25 9674.5 26 9942.0 27 10437.0 28 10606.0 29 10775.0 30 12589.0 31 14403.0 32 16347.0 33 18291.0 34 21839.0 35 25387.0 36 28224.0 37 31061.0 38 32808.5 39 34556.0 40 38582.5 41 42609.0 42 51258.5 43 59908.0 44 75221.5 45 90535.0 46 133979.0 47 177423.0 48 239311.5 49 301200.0 50 328376.0 51 355552.0 52 307133.0 53 258714.0 54 220324.5 55 181935.0 56 161730.5 57 141526.0 58 131519.5 59 121513.0 60 118475.5 61 115438.0 62 113946.0 63 112454.0 64 109374.5 65 106295.0 66 87607.0 67 68919.0 68 54870.5 69 40822.0 70 33755.5 71 26689.0 72 24449.5 73 22210.0 74 18840.0 75 11533.5 76 7597.0 77 5710.5 78 3824.0 79 2919.0 80 2014.0 81 1461.5 82 909.0 83 675.5 84 442.0 85 307.0 86 172.0 87 144.0 88 116.0 89 73.0 90 30.0 91 21.5 92 13.0 93 11.0 94 9.0 95 4.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2853005.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.377772492856007 #Duplication Level Percentage of deduplicated Percentage of total 1 73.55820727452284 21.60976278293278 2 9.925316014693967 5.831673515987594 3 3.8335260183569244 3.3786136563820164 4 2.1770660851945736 2.558294086110355 5 1.524660366757625 2.239556269173996 6 1.1521950725171506 2.030935482467915 7 0.9392934506584875 1.9316044508232302 8 0.8189364573451964 1.9246823143994125 9 0.6695066433858186 1.770175246665983 >10 4.957628710023941 25.27763802282785 >50 0.2157336427114039 4.452086140448331 >100 0.21376337590110422 12.471160560142446 >500 0.007923852571525747 1.587700453358544 >1k 0.004922393264129622 2.901631476105754 >5k 6.002918614792222E-4 1.2946733431396644 >10k+ 7.203502337750667E-4 8.739812199034244 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 189272 6.6341278756959765 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 14402 0.5048010781614474 No Hit CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC 13020 0.4563609247092101 No Hit CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT 10888 0.38163269955713364 Illumina Single End Adapter 1 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG 10128 0.35499412023462984 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 10084 0.3534518866949059 No Hit CGTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTC 9793 0.3432521148753683 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTT 9330 0.3270236119460008 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCT 6879 0.241114193630926 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCC 5656 0.19824711137905474 No Hit GGGCCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTC 5049 0.17697129868331812 No Hit GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC 4811 0.16862921726390245 No Hit CGTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCT 4695 0.16456332884099398 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTC 4240 0.14861523200975812 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3847 0.13484028243904234 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3433 0.12032926686073105 No Hit AGGCCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTC 2973 0.10420591621816296 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3931644003427964 0.0 2 0.0 0.0 0.0 1.1642461194424827 0.0 3 0.0 0.0 0.0 2.009004540826252 0.0 4 0.0 0.0 0.0 2.605533463839005 0.0 5 0.0 0.0 0.0 5.388423784746259 0.0 6 0.0 0.0 0.0 6.980814965273457 0.0 7 0.0 0.0 0.0 10.828267037737403 0.0 8 0.0 0.0 0.0 15.369268543167642 0.0 9 0.0 0.0 0.0 19.879951139237402 0.0 10 0.0 0.0 0.0 22.162211422692916 0.0 11 0.0 0.0 0.0 23.81695790929213 0.0 12 0.0 0.0 0.0 24.85775524403217 0.0 13 0.0 0.0 0.0 25.423719902348576 0.0 14 0.0 0.0 0.0 25.803494911505588 0.0 15 0.0 0.0 0.0 26.507910080774483 0.0 16 0.0 0.0 0.0 27.202721341182368 0.0 17 0.0 0.0 0.0 28.202824740931053 0.0 18 0.0 0.0 0.0 28.729462443984502 0.0 19 0.0 0.0 0.0 29.3895734497486 0.0 20 0.0 0.0 0.0 30.096337020089344 0.0 21 3.505076226645239E-5 0.0 0.0 30.896931481017383 0.0 22 3.505076226645239E-5 0.0 0.0 31.55139931405658 0.0 23 3.505076226645239E-5 0.0 0.0 32.14323143492563 0.0 24 3.505076226645239E-5 0.0 0.0 32.61203538023943 0.0 25 3.505076226645239E-5 0.0 0.0 33.066468513023985 0.0 26 3.505076226645239E-5 0.0 0.0 33.524932483469186 0.0 27 3.505076226645239E-5 0.0 0.0 33.99731160653416 0.0 28 3.505076226645239E-5 0.0 0.0 34.43656775925734 0.0 29 3.505076226645239E-5 0.0 0.0 34.904390283227684 0.0 30 3.505076226645239E-5 0.0 0.0 35.32577054719498 0.0 31 3.505076226645239E-5 0.0 0.0 35.76674418726921 0.0 32 3.505076226645239E-5 0.0 0.0 36.2596981077846 0.0 33 3.505076226645239E-5 0.0 0.0 36.707506646500796 0.0 34 3.505076226645239E-5 0.0 0.0 37.20820678547707 0.0 35 3.505076226645239E-5 0.0 0.0 37.647007278290786 0.0 36 3.505076226645239E-5 0.0 0.0 38.13838391450418 0.0 37 3.505076226645239E-5 0.0 0.0 38.75906281271852 0.0 38 3.505076226645239E-5 0.0 0.0 39.445216534846594 0.0 39 3.505076226645239E-5 0.0 0.0 40.13228157679359 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 44545 0.0 44.43428 1 CGCACTT 3740 0.0 41.991978 34 AATGCGG 265 0.0 41.603775 1 ACCCGCA 3900 0.0 41.480774 31 GCACTTA 3770 0.0 41.47878 35 CCGCACT 3790 0.0 41.319263 33 GTTTTTT 48545 0.0 41.009373 2 ACGTAGG 220 0.0 40.90909 1 CCCGCAC 3990 0.0 40.82707 32 CACTTAC 3850 0.0 40.79221 36 TAGTAGG 670 0.0 40.63433 1 CTTACGG 255 0.0 40.588234 1 TTATGAC 4485 0.0 40.183945 26 ACTTACT 3840 0.0 40.136723 37 CTTACTG 3825 0.0 40.117645 38 ATAGCGG 320 0.0 40.07813 1 CAACGCA 4690 0.0 40.010662 16 TATACGG 180 0.0 40.0 1 AACGCAA 4675 0.0 39.99465 17 CTTATGA 4515 0.0 39.916943 25 >>END_MODULE