SRR1043376_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043376_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2760023
Sequences flagged as poor quality	0
Sequence length	52
%GC	46

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	127018	4.6020630987495394	No Hit
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	13502	0.4891988218938755	TruSeq Adapter, Index 15 (95% over 23bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	13255	0.4802496211082299	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCTT	11684	0.4233298055849535	TruSeq Adapter, Index 21 (95% over 23bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	9209	0.3336566398178566	No Hit
GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	7590	0.2749977083524304	TruSeq Adapter, Index 15 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	7204	0.2610123176509761	TruSeq Adapter, Index 21 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT	4900	0.17753475242778774	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG	4850	0.17572317332138176	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	3778	0.13688291728003718	No Hit
TCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	3485	0.126267063716498	TruSeq Adapter, Index 15 (95% over 23bp)
GGGCCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT	3375	0.12228158968240481	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTT	3328	0.12057870532238318	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3251	0.11778887349851795	No Hit
CGTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	2835	0.10271653533322006	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2802	0.10152089312299209	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	33085	45.311775	1
CTAACGG	175	44.685715	1
ACATACG	185	43.513515	16
CGGTCTA	460	43.500004	30
TCACGAC	475	42.610523	24
CGCACTT	3360	42.166664	34
CACGACG	470	42.085106	25
CCGCACT	3365	42.035664	33
ACCCGCA	3465	42.017315	31
CACTTAC	3350	41.8806	36
TAGCATA	1015	41.69458	29
CCCGCAC	3510	41.478634	32
ACTTACT	3400	41.19706	37
TTGACGG	330	41.121212	1
GTTGATC	1195	40.80335	15
GCACTTA	3450	40.733337	35
TAGTAGG	565	40.707966	1
TACGGGT	215	40.65116	3
GTTTTTT	37720	40.567074	2
TTATGAC	3930	40.49873	26

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content