##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043376_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2760023 Sequences flagged as poor quality 0 Sequence length 52 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.327675167924326 33.0 31.0 34.0 31.0 34.0 2 32.65424418564628 34.0 31.0 34.0 31.0 34.0 3 32.765746517329745 34.0 31.0 34.0 31.0 34.0 4 36.21255547508119 37.0 37.0 37.0 35.0 37.0 5 36.13701081476495 37.0 37.0 37.0 35.0 37.0 6 36.30927713283549 37.0 37.0 37.0 35.0 37.0 7 36.24064980617915 37.0 37.0 37.0 35.0 37.0 8 36.22145902407335 37.0 37.0 37.0 35.0 37.0 9 37.8169863077228 39.0 38.0 39.0 35.0 39.0 10 37.630220110484586 39.0 37.0 39.0 35.0 39.0 11 37.27511328709942 39.0 37.0 39.0 35.0 39.0 12 37.28296032315673 39.0 37.0 39.0 35.0 39.0 13 37.25945291035618 39.0 37.0 39.0 34.0 39.0 14 38.600529053562234 40.0 38.0 41.0 35.0 41.0 15 38.65539272679974 40.0 38.0 41.0 35.0 41.0 16 38.51863299689894 40.0 38.0 41.0 34.0 41.0 17 38.51326565032248 40.0 38.0 41.0 34.0 41.0 18 38.29647832644873 40.0 37.0 41.0 34.0 41.0 19 38.08148772673271 40.0 37.0 41.0 34.0 41.0 20 37.813945391034785 40.0 35.0 41.0 34.0 41.0 21 37.72597510962771 40.0 35.0 41.0 34.0 41.0 22 37.67119078355506 39.0 35.0 41.0 34.0 41.0 23 37.69267393786211 39.0 35.0 41.0 34.0 41.0 24 37.61109019743676 39.0 35.0 41.0 34.0 41.0 25 37.506160637067154 39.0 35.0 41.0 34.0 41.0 26 37.43216451457108 39.0 35.0 41.0 34.0 41.0 27 37.464046132948894 39.0 35.0 41.0 34.0 41.0 28 37.43994597146473 39.0 35.0 41.0 34.0 41.0 29 37.350449253502596 39.0 35.0 41.0 33.0 41.0 30 37.25951885183566 39.0 35.0 41.0 33.0 41.0 31 37.13720103057112 39.0 35.0 41.0 33.0 41.0 32 36.84069009569848 39.0 35.0 41.0 32.0 41.0 33 36.45074008441234 39.0 35.0 41.0 31.0 41.0 34 36.19988529081098 39.0 35.0 41.0 30.0 41.0 35 35.95883621259678 39.0 35.0 41.0 30.0 41.0 36 35.9469359494468 39.0 35.0 41.0 30.0 41.0 37 35.80773348627892 38.0 35.0 41.0 30.0 41.0 38 35.67336576543021 38.0 35.0 41.0 29.0 41.0 39 35.625934638950476 38.0 35.0 41.0 29.0 41.0 40 35.60665653873174 38.0 35.0 40.0 29.0 41.0 41 35.5869338770003 38.0 35.0 40.0 29.0 41.0 42 35.53672704901372 38.0 35.0 40.0 29.0 41.0 43 35.46688234119788 38.0 35.0 40.0 29.0 41.0 44 35.32903348993831 38.0 35.0 40.0 28.0 41.0 45 35.227105353832194 37.0 35.0 40.0 27.0 41.0 46 35.179490170915244 37.0 35.0 40.0 26.0 41.0 47 35.079812740690926 37.0 35.0 40.0 26.0 41.0 48 34.987832710089734 37.0 35.0 40.0 26.0 41.0 49 34.9452504562462 37.0 35.0 40.0 27.0 41.0 50 34.82978909958359 36.0 35.0 40.0 26.0 41.0 51 34.710109662129625 36.0 35.0 40.0 26.0 41.0 52 34.325782792389774 36.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 3.0 13 11.0 14 12.0 15 43.0 16 92.0 17 239.0 18 517.0 19 1045.0 20 1957.0 21 3236.0 22 5380.0 23 8603.0 24 14722.0 25 26300.0 26 38940.0 27 46329.0 28 47815.0 29 47857.0 30 50426.0 31 57095.0 32 67212.0 33 86707.0 34 193630.0 35 261962.0 36 254982.0 37 247528.0 38 383387.0 39 912451.0 40 1539.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.307509393943455 16.867395670253472 23.70136045967733 30.12373447612574 2 35.58908748224199 19.272230702425304 24.043314131802525 21.09536768353017 3 25.47801232091182 20.56566195281706 34.73402214401837 19.222303582252756 4 23.097017669780286 23.404478875719516 32.46436714476655 21.03413630973365 5 21.295619637952292 30.227936506326213 29.656310835090867 18.820133020630625 6 75.84146943703006 2.1326996188075245 18.760568299611997 3.2652626445504254 7 75.51092871327522 2.0056716918663358 16.973517974306738 5.509881620551712 8 65.28043425725075 3.6151872647438084 23.186835761875898 7.91754271612954 9 39.66408975577377 15.160815688854768 27.07263671353463 18.102457841836824 10 28.54313170578651 16.283378797930308 36.80683095756811 18.366658538715075 11 25.361890100191193 13.35039599307687 39.687748978903436 21.5999649278285 12 20.79087746732545 14.256475398936894 42.716202002664474 22.236445131073182 13 16.0399750291936 17.088951794966924 44.49995525399607 22.371117921843407 14 17.122248618942667 17.662606434801447 43.27213939883834 21.943005547417542 15 20.54577081422872 14.629008526378223 43.231161479451444 21.594059179941617 16 19.056181778195327 19.518134450328855 39.98426824703997 21.441415524435847 17 20.433126825392396 19.65066957775352 38.882973076673636 21.03323052018045 18 19.93233389721752 26.249455167583747 35.94495408190439 17.87325685329434 19 21.148519414512126 21.58688532668025 34.38119899725473 22.883396261552893 20 20.542763592912088 26.42525080406939 34.13337497549839 18.89861062752013 21 18.009378907349685 20.514720348344923 36.994184468752614 24.481716275552774 22 19.600271447013302 22.2029671491868 33.96638361346989 24.230377790330007 23 20.258309441624217 20.205338868552907 37.393094187983216 22.14325750183966 24 22.631296913105434 18.799734639892492 34.27043905068907 24.298529396313 25 17.51318739010508 19.727263142372365 37.77019249477269 24.989356972749867 26 17.945321470147167 18.065211775409118 36.80947586306346 27.17999089138025 27 21.410980995448227 21.804709598434506 36.09433689501863 20.689972511098638 28 21.507393235491154 22.330828402516936 32.67994505842886 23.48183330356305 29 23.852880936137126 20.350663744468797 34.67612407577763 21.120331243616448 30 25.009393037666715 22.446443381087768 30.94727833789791 21.59688524334761 31 27.472452222318438 19.530851735655826 31.81995222503581 21.176743816989934 32 25.565402897004848 23.147596958431144 29.644970349884765 21.642029794679246 33 21.72083348580791 24.35657239088225 34.726812059174875 19.195782064134974 34 22.28952439889088 25.48199779494591 33.35508435980425 18.87339344635896 35 20.625154210671433 28.973635364632834 33.15218749988678 17.24902292480896 36 25.63623564006532 27.555784861213112 28.45273390837685 18.35524559034472 37 23.342269249205533 27.221657210827594 32.56795323807084 16.868120301896035 38 24.529505732379768 22.499667575233975 30.870141299547143 22.100685392839118 39 26.18195573007906 19.69842280299838 34.42540152745104 19.69421993947152 40 22.387168512726163 19.623350964828916 35.49071873676415 22.49876178568077 41 22.12260550002663 22.674231337927257 31.35285466824008 23.85030849380603 42 21.00004239095109 18.614699949964187 34.439241991823984 25.946015667260742 43 23.42397146690444 20.294070013184673 33.652871733315266 22.62908678659562 44 21.838404969813656 21.52250180523858 34.159824030451915 22.479269194495842 45 22.824121393191287 21.869890214682993 33.0234929201677 22.282495471958025 46 23.815018932813242 19.8298709829592 33.200592893609944 23.154517190617614 47 20.41997476107989 20.459757038256566 35.766223687266375 23.35404451339717 48 22.212387360540113 19.136253574698472 31.903429790258997 26.747929274502425 49 21.722826222824953 17.33496423761686 36.24422695028266 24.697982589275526 50 20.926890826634413 17.352029312799207 37.599288121874345 24.121791738692032 51 19.219803603085918 16.35174779340607 36.60150658164805 27.826942021859963 52 17.354964070951585 17.35561623942989 40.84581903846454 24.443600651153993 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 614.0 1 4175.5 2 7737.0 3 89322.0 4 170907.0 5 97277.0 6 23647.0 7 21569.5 8 19492.0 9 19079.0 10 18666.0 11 18127.0 12 17588.0 13 16993.0 14 15152.5 15 13907.0 16 12987.5 17 12068.0 18 11319.5 19 10571.0 20 9921.0 21 9271.0 22 8750.5 23 8230.0 24 8480.5 25 8731.0 26 9552.5 27 10374.0 28 10913.5 29 11453.0 30 12905.0 31 14357.0 32 16960.0 33 19563.0 34 22891.5 35 26220.0 36 28753.0 37 31286.0 38 35281.5 39 45900.5 40 52524.0 41 68271.5 42 84019.0 43 116972.5 44 149926.0 45 200084.0 46 250242.0 47 276273.0 48 302304.0 49 287310.0 50 272316.0 51 241400.5 52 210485.0 53 182158.5 54 153832.0 55 140444.0 56 127056.0 57 121837.0 58 116618.0 59 114518.0 60 112418.0 61 111022.0 62 109626.0 63 107445.5 64 88496.0 65 71727.0 66 57998.5 67 44270.0 68 37840.0 69 31410.0 70 27817.0 71 24224.0 72 22919.5 73 21615.0 74 18095.5 75 14576.0 76 11247.0 77 7918.0 78 5801.0 79 3684.0 80 2830.0 81 1976.0 82 1438.0 83 900.0 84 635.0 85 370.0 86 304.0 87 238.0 88 163.5 89 55.0 90 21.0 91 15.0 92 9.0 93 7.0 94 5.0 95 4.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2760023.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.354222539252067 #Duplication Level Percentage of deduplicated Percentage of total 1 72.9856977196916 21.42438413046409 2 11.287690149996529 6.626827372342432 3 4.343509592358203 3.825010415263762 4 2.1722826015076637 2.550626676112055 5 1.3201764072698963 1.9376376025035402 6 0.8890908945235035 1.5659143185279365 7 0.6648275748266165 1.3660847607184228 8 0.520802657648569 1.223020568932 9 0.44855825067847904 1.185037084101032 >10 4.844467892539131 30.375142839955032 >50 0.331805772472994 6.5139624075188545 >100 0.17657575814895254 9.7790863294387 >500 0.00831185297974132 1.5883253472297485 >1k 0.005334472807893678 3.1394698392797085 >5k 3.7217252148095427E-4 0.8740960498339057 >10k+ 4.962300286412724E-4 6.025374257778952 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 127018 4.6020630987495394 No Hit CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT 13502 0.4891988218938755 TruSeq Adapter, Index 15 (95% over 23bp) GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 13255 0.4802496211082299 No Hit CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCTT 11684 0.4233298055849535 TruSeq Adapter, Index 21 (95% over 23bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 9209 0.3336566398178566 No Hit GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT 7590 0.2749977083524304 TruSeq Adapter, Index 15 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 7204 0.2610123176509761 TruSeq Adapter, Index 21 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT 4900 0.17753475242778774 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG 4850 0.17572317332138176 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC 3778 0.13688291728003718 No Hit TCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT 3485 0.126267063716498 TruSeq Adapter, Index 15 (95% over 23bp) GGGCCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT 3375 0.12228158968240481 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTT 3328 0.12057870532238318 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3251 0.11778887349851795 No Hit CGTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG 2835 0.10271653533322006 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2802 0.10152089312299209 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.43695288046512654 0.0 2 0.0 0.0 0.0 1.4037926495540074 0.0 3 0.0 0.0 0.0 2.2707057151335333 0.0 4 0.0 0.0 0.0 2.8322227749551363 0.0 5 0.0 0.0 0.0 5.719771175819911 0.0 6 0.0 0.0 0.0 6.752661119128355 0.0 7 0.0 0.0 0.0 9.763795446632148 0.0 8 0.0 0.0 0.0 13.158948313111884 0.0 9 0.0 0.0 0.0 16.419609546732037 0.0 10 0.0 0.0 0.0 18.187203512434497 0.0 11 0.0 0.0 0.0 19.683531622743722 0.0 12 0.0 0.0 0.0 20.74276192625931 0.0 13 0.0 0.0 0.0 21.28192409990786 0.0 14 0.0 0.0 0.0 21.625471961646696 0.0 15 0.0 0.0 0.0 22.5055008599566 0.0 16 0.0 0.0 0.0 23.50299254752587 0.0 17 0.0 0.0 0.0 24.670772671097307 0.0 18 0.0 0.0 0.0 25.389788418429845 0.0 19 0.0 0.0 0.0 26.190433920297043 0.0 20 3.6231582128119945E-5 0.0 0.0 27.059919428207664 0.0 21 3.6231582128119945E-5 0.0 0.0 27.932303462688534 0.0 22 3.6231582128119945E-5 0.0 0.0 28.739289491428153 0.0 23 3.6231582128119945E-5 0.0 0.0 29.465768944679084 0.0 24 1.0869474638435984E-4 0.0 0.0 30.062321944418578 0.0 25 1.0869474638435984E-4 0.0 0.0 30.633657762996904 0.0 26 1.0869474638435984E-4 0.0 0.0 31.214522487674923 0.0 27 1.4492632851247978E-4 0.0 0.0 31.81252475069954 0.0 28 1.4492632851247978E-4 0.0 0.0 32.402121286670436 0.0 29 1.8115791064059973E-4 0.0 0.0 33.0368986055551 0.0 30 1.8115791064059973E-4 0.0 0.0 33.612582213988794 0.0 31 1.8115791064059973E-4 0.0 0.0 34.18112820074325 0.0 32 1.8115791064059973E-4 0.0 0.0 34.81793448822709 0.0 33 1.8115791064059973E-4 0.0 0.0 35.41673384605853 0.0 34 1.8115791064059973E-4 0.0 0.0 36.05172855443596 0.0 35 1.8115791064059973E-4 0.0 0.0 36.62092670966872 0.0 36 2.1738949276871967E-4 0.0 0.0 37.177842358560056 0.0 37 2.1738949276871967E-4 0.0 0.0 37.882546630951985 0.0 38 2.1738949276871967E-4 0.0 0.0 38.5820697870996 0.0 39 2.1738949276871967E-4 0.0 0.0 39.41778746046681 0.0 40 2.1738949276871967E-4 0.0 0.0 40.155063925191925 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 33085 0.0 45.311775 1 CTAACGG 175 0.0 44.685715 1 ACATACG 185 0.0 43.513515 16 CGGTCTA 460 0.0 43.500004 30 TCACGAC 475 0.0 42.610523 24 CGCACTT 3360 0.0 42.166664 34 CACGACG 470 0.0 42.085106 25 CCGCACT 3365 0.0 42.035664 33 ACCCGCA 3465 0.0 42.017315 31 CACTTAC 3350 0.0 41.8806 36 TAGCATA 1015 0.0 41.69458 29 CCCGCAC 3510 0.0 41.478634 32 ACTTACT 3400 0.0 41.19706 37 TTGACGG 330 0.0 41.121212 1 GTTGATC 1195 0.0 40.80335 15 GCACTTA 3450 0.0 40.733337 35 TAGTAGG 565 0.0 40.707966 1 TACGGGT 215 0.0 40.65116 3 GTTTTTT 37720 0.0 40.567074 2 TTATGAC 3930 0.0 40.49873 26 >>END_MODULE