SRR1043371_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043371_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	981323
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	72209	7.358331558518449	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	8380	0.8539492093836585	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	8004	0.8156335885330315	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	5841	0.5952168653949821	No Hit
CGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	4246	0.4326811865206461	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	3116	0.3175305174748783	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCC	3052	0.3110087096705162	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	2228	0.22704043418935457	No Hit
ACCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	2131	0.21715581923586832	No Hit
GCCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	2067	0.21063401143150626	No Hit
AGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	1831	0.1865848451529211	No Hit
ACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	1734	0.17670023019943484	No Hit
TCCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	1609	0.16396232433154018	No Hit
CGTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT	1531	0.15601387106997391	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTT	1516	0.15448532236582654	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCT	1471	0.14989967625338446	No Hit
TGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCTT	1446	0.1473520950798055	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTC	1439	0.14663877235120343	No Hit
TGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	1318	0.13430847947108138	No Hit
GGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	1234	0.12574860672785618	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGC	1193	0.12157057360318672	No Hit
ATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	1027	0.10465463461062259	No Hit
ATGCCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	1021	0.10404321512896367	No Hit
CGGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT	1016	0.10353369889424786	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCG	1008	0.1027184729187026	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTT	25	3.8903865E-5	45.000004	22
CGGGTAG	60	0.0	45.000004	5
GTCGCTC	25	3.8903865E-5	45.000004	16
GTCGCAA	25	3.8903865E-5	45.000004	8
CAAACGG	30	2.1651758E-6	45.000004	1
TACTTAG	30	2.1651758E-6	45.000004	22
TACTTAA	30	2.1651758E-6	45.000004	33
CTATCGG	35	1.2116834E-7	45.000004	1
CGTGCGG	25	3.8903865E-5	45.000004	1
CAACCGG	30	2.1651758E-6	45.000004	1
TTCGTCG	30	2.1651758E-6	45.000004	30
GCCATAC	25	3.8903865E-5	45.000004	12
TAGCCGT	25	3.8903865E-5	45.000004	20
CGTTATA	25	3.8903865E-5	45.000004	24
ATCGTCG	25	3.8903865E-5	45.000004	13
TAGCATA	35	1.2116834E-7	45.000004	29
ATCAACG	120	0.0	45.000004	14
GTTACGG	70	0.0	45.000004	1
GTAGCCG	25	3.8903865E-5	45.000004	19
CTAAAGT	30	2.1651758E-6	45.000004	23

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content