##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043371_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 981323 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.10587645454147 33.0 31.0 34.0 30.0 34.0 2 32.41016158797868 34.0 31.0 34.0 30.0 34.0 3 32.45246366384972 34.0 31.0 34.0 31.0 34.0 4 36.051037222199014 37.0 35.0 37.0 35.0 37.0 5 36.002857367044285 37.0 35.0 37.0 35.0 37.0 6 36.2621185888846 37.0 37.0 37.0 35.0 37.0 7 36.19390863151072 37.0 37.0 37.0 35.0 37.0 8 36.103219836893665 37.0 37.0 37.0 35.0 37.0 9 37.64717121681648 39.0 37.0 39.0 35.0 39.0 10 37.49525079917621 39.0 37.0 39.0 35.0 39.0 11 37.23572055276397 39.0 37.0 39.0 34.0 39.0 12 37.21287893996166 39.0 37.0 39.0 34.0 39.0 13 37.23366414524066 39.0 37.0 39.0 34.0 39.0 14 38.63018190748612 40.0 38.0 41.0 35.0 41.0 15 38.76441803565187 40.0 38.0 41.0 35.0 41.0 16 38.80667833119167 40.0 38.0 41.0 35.0 41.0 17 38.76765346374231 40.0 38.0 41.0 35.0 41.0 18 38.50083815420611 40.0 38.0 41.0 35.0 41.0 19 38.231808487113824 40.0 37.0 41.0 35.0 41.0 20 37.94138627139076 40.0 35.0 41.0 34.0 41.0 21 37.869681032646746 40.0 35.0 41.0 34.0 41.0 22 37.825124856953316 40.0 35.0 41.0 34.0 41.0 23 37.79012720582316 40.0 35.0 41.0 34.0 41.0 24 37.70496564332029 39.0 35.0 41.0 34.0 41.0 25 37.652716791515125 39.0 35.0 41.0 34.0 41.0 26 37.65591349637174 39.0 35.0 41.0 34.0 41.0 27 37.66420434454303 39.0 35.0 41.0 34.0 41.0 28 37.59914829266205 39.0 35.0 41.0 34.0 41.0 29 37.61526225310117 40.0 35.0 41.0 34.0 41.0 30 37.500875858407476 40.0 35.0 41.0 34.0 41.0 31 37.36021778761937 40.0 35.0 41.0 33.0 41.0 32 37.21378180272958 40.0 35.0 41.0 33.0 41.0 33 37.01787281048136 40.0 35.0 41.0 33.0 41.0 34 36.794520254798876 40.0 35.0 41.0 32.0 41.0 35 36.668196913758266 40.0 35.0 41.0 32.0 41.0 36 36.59170426047285 40.0 35.0 41.0 31.0 41.0 37 36.50870508487012 39.0 35.0 41.0 31.0 41.0 38 36.430228375366724 39.0 35.0 41.0 31.0 41.0 39 36.36001805725536 39.0 35.0 41.0 31.0 41.0 40 36.28570919055194 39.0 35.0 41.0 31.0 41.0 41 36.24489184498886 39.0 35.0 41.0 31.0 41.0 42 36.14418086603494 39.0 35.0 41.0 31.0 41.0 43 36.001502053859944 39.0 35.0 41.0 30.0 41.0 44 35.879730730860274 38.0 35.0 40.0 30.0 41.0 45 35.82155212911549 38.0 35.0 40.0 29.0 41.0 46 35.728776356001035 38.0 35.0 40.0 29.0 41.0 47 35.57089663647953 38.0 35.0 40.0 28.0 41.0 48 35.559854400640766 38.0 35.0 40.0 28.0 41.0 49 35.48453872985755 38.0 35.0 40.0 28.0 41.0 50 35.35454075773217 38.0 35.0 40.0 28.0 41.0 51 34.9632434988276 37.0 35.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 4.0 14 5.0 15 9.0 16 25.0 17 72.0 18 130.0 19 284.0 20 594.0 21 924.0 22 1550.0 23 2469.0 24 4345.0 25 7942.0 26 12115.0 27 14114.0 28 13773.0 29 13507.0 30 15011.0 31 17796.0 32 22452.0 33 29357.0 34 52645.0 35 98969.0 36 105433.0 37 75594.0 38 131307.0 39 360797.0 40 99.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.1494156358304 19.976093498267137 25.208111906069664 29.666378959832794 2 34.37665274328636 19.155160940893058 26.331697106864915 20.136489208955666 3 21.383988758033798 21.214421755120384 38.71345112669325 18.68813836015257 4 22.261273810967438 23.59793870112083 36.43204123412984 17.708746253781886 5 19.578467028694934 28.4220384114099 32.30577495890752 19.69371960098765 6 70.0469672065161 1.512244184636455 23.70035146429871 4.740437144548737 7 70.70465076228723 1.2590146159827091 19.4985748830915 8.537759738638552 8 57.37010138354039 2.7262175654702885 28.937363131201447 10.966317919787878 9 32.64959651409372 16.372387073369318 31.681617571380677 19.296398841156275 10 25.33508335176084 18.521424648153566 43.51981967201421 12.62367232807139 11 21.93987097010872 15.177265793219968 41.665791997130405 21.217071239540903 12 15.938890660873128 20.123649399840826 44.56106704927939 19.376392890006656 13 11.417851206993008 23.300992639528474 44.59398179804203 20.68717435543649 14 9.599591571786252 23.003129448713626 46.035199419559106 21.36207955994102 15 10.288253714628109 18.184124900771714 50.27783920279052 21.24978218180966 16 10.708910318009462 25.817595226036687 39.98561126153163 23.487883194422224 17 12.943648523472904 22.80421431068058 42.139947805156915 22.112189360689598 18 14.321074712403561 29.259886907776544 40.259119576327066 16.159918803492836 19 14.403004922945861 24.371282442172454 36.36549841387596 24.860214221005723 20 11.913508600124526 31.037385244206035 35.110458024524036 21.938648131145403 21 12.977174691717202 24.669043729740363 36.88072123042056 25.473060348121873 22 10.991997538017554 27.25392149170049 32.23597123475145 29.5181097355305 23 10.792369077255909 23.94451164397451 43.49189818235178 21.771221096417793 24 16.80720822807577 21.307051806591716 39.36369574543754 22.52204421989498 25 12.558861863015542 25.5888224366493 38.21891466927811 23.63340103105705 26 16.076969560481107 21.266800024049164 36.828241058244835 25.82798935722489 27 21.761642191205137 21.60002364155329 37.4229484074051 19.215385759836465 28 14.874103633564076 21.320401131941267 35.54028592013027 28.26520931436438 29 21.530118014150286 21.242852761017524 34.047912868647735 23.179116356184455 30 20.206496739605615 22.01629840531609 30.201880522519087 27.57532433255921 31 20.954058959180617 21.57607637852165 33.92990890868756 23.53995575361018 32 18.593368340495434 21.12719257573704 34.199035383864434 26.080403699903087 33 14.589487864851838 24.555013996410967 34.64435257300603 26.211145565731158 34 13.345453026169773 24.364047311639492 39.50340509699661 22.78709456519413 35 15.265615908319688 23.00465799741777 37.6486640993842 24.081061994878343 36 13.195349543422502 33.9352078775286 33.85572334491294 19.013719234135955 37 12.696736956129634 29.416716004822064 37.222912333655685 20.663634705392617 38 11.686977682169887 29.60360655971581 31.945546980963453 26.763868777150847 39 19.281317160608687 26.98336837106641 33.41804889929208 20.317265569032827 40 13.701197261248335 22.75163223525791 38.69307047730462 24.854100026189137 41 18.330254156888202 24.141796330056465 30.904707216686045 26.623242296369288 42 18.332597931567893 17.877294224225867 39.099970142348646 24.690137701857594 43 21.828388817952906 21.79914258608022 36.63941434165917 19.733054254307707 44 14.952161520722534 24.872646417132792 36.817846927056635 23.35734513508804 45 18.072438942122012 21.573936410335843 35.859650696050124 24.493973951492016 46 22.551290451767663 19.896405159157588 34.030895026408224 23.521409362666525 47 15.421731682636604 17.89828629309616 39.444199310522635 27.235782713744612 48 16.847358107371374 16.52279626585742 34.101921589527606 32.5279240372436 49 19.146601068149835 16.26172014718905 40.12562632283153 24.46605246182959 50 17.151539299496697 15.497343891868425 40.98803350171146 26.363083306923407 51 14.629433937653555 15.29537165642709 38.67758118376926 31.397613222150095 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 432.0 1 1723.5 2 3015.0 3 40410.5 4 77806.0 5 42140.0 6 6474.0 7 6018.5 8 5563.0 9 5927.0 10 6291.0 11 6541.5 12 6792.0 13 6600.0 14 6408.0 15 5889.0 16 5370.0 17 4860.0 18 4350.0 19 3897.0 20 3444.0 21 3233.5 22 3023.0 23 2878.5 24 2734.0 25 2695.5 26 3557.5 27 4458.0 28 4189.0 29 3920.0 30 4834.5 31 5749.0 32 6363.5 33 6978.0 34 8884.5 35 10791.0 36 12048.5 37 13306.0 38 16111.5 39 18917.0 40 26640.0 41 34363.0 42 46639.5 43 58916.0 44 86039.0 45 113162.0 46 143788.5 47 174415.0 48 169327.5 49 164240.0 50 129580.5 51 94921.0 52 73369.0 53 51817.0 54 40607.0 55 29397.0 56 24311.5 57 19226.0 58 16556.5 59 13887.0 60 11600.0 61 9313.0 62 7659.0 63 6005.0 64 4845.0 65 3685.0 66 3192.0 67 2699.0 68 2363.5 69 2028.0 70 1732.0 71 1436.0 72 1360.5 73 1285.0 74 1086.0 75 717.5 76 548.0 77 439.0 78 330.0 79 241.0 80 152.0 81 103.0 82 54.0 83 49.0 84 44.0 85 27.5 86 11.0 87 8.0 88 5.0 89 9.5 90 14.0 91 8.0 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 981323.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.089903977405427 #Duplication Level Percentage of deduplicated Percentage of total 1 72.28607520010843 20.305089112745538 2 12.0691774939122 6.780440737805127 3 4.900210979283835 4.129393676313322 4 2.457197821870653 2.760898034793456 5 1.5205236713507904 2.1355681961807833 6 0.9789157533902474 1.6498589708820925 7 0.6728404543992381 1.3230016629331902 8 0.4961911017180883 1.1150368321363286 9 0.4094365813560613 1.0350930829616016 >10 3.496612722150273 21.538583430902115 >50 0.4389671584994415 8.333350642458036 >100 0.2533488434182251 13.229368615633167 >500 0.01134944240746381 2.1235481385588373 >1k 0.007688331953443225 3.8291535372705576 >5k 0.0010983331362061752 2.28562435853892 >10k+ 3.661110454020584E-4 7.425990969886924 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 72209 7.358331558518449 No Hit CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 8380 0.8539492093836585 No Hit CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT 8004 0.8156335885330315 No Hit GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 5841 0.5952168653949821 No Hit CGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG 4246 0.4326811865206461 No Hit TCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 3116 0.3175305174748783 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCC 3052 0.3110087096705162 No Hit CGTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC 2228 0.22704043418935457 No Hit ACCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG 2131 0.21715581923586832 No Hit GCCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG 2067 0.21063401143150626 No Hit AGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG 1831 0.1865848451529211 No Hit ACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 1734 0.17670023019943484 No Hit TCCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG 1609 0.16396232433154018 No Hit CGTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT 1531 0.15601387106997391 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTT 1516 0.15448532236582654 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCT 1471 0.14989967625338446 No Hit TGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCTT 1446 0.1473520950798055 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTC 1439 0.14663877235120343 No Hit TGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG 1318 0.13430847947108138 No Hit GGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG 1234 0.12574860672785618 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGC 1193 0.12157057360318672 No Hit ATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG 1027 0.10465463461062259 No Hit ATGCCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC 1021 0.10404321512896367 No Hit CGGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT 1016 0.10353369889424786 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCG 1008 0.1027184729187026 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8385618190952419 0.0 2 0.0 0.0 0.0 2.832706458525888 0.0 3 0.0 0.0 0.0 4.745634210142838 0.0 4 0.0 0.0 0.0 5.9798863371183595 0.0 5 0.0 0.0 0.0 12.09662873488138 0.0 6 0.0 0.0 0.0 13.904901851887706 0.0 7 0.0 0.0 0.0 19.06864508423832 0.0 8 0.0 0.0 0.0 25.525132907309825 0.0 9 0.0 0.0 0.0 30.05085991054933 0.0 10 0.0 0.0 0.0 32.835468036518044 0.0 11 0.0 0.0 0.0 35.244358891007344 0.0 12 0.0 0.0 0.0 36.90996746229325 0.0 13 0.0 0.0 0.0 37.572949986905435 0.0 14 0.0 0.0 0.0 38.02234330592476 0.0 15 0.0 0.0 0.0 39.48801770670819 0.0 16 0.0 0.0 0.0 41.185114381299535 0.0 17 0.0 0.0 0.0 43.09141842186518 0.0 18 0.0 0.0 0.0 44.063473494455955 0.0 19 0.0 0.0 0.0 45.13417091008771 0.0 20 0.0 0.0 0.0 46.23401265434521 0.0 21 1.0190324694315735E-4 0.0 0.0 47.280253290710604 0.0 22 6.11419481658944E-4 0.0 0.0 48.3116160530223 0.0 23 6.11419481658944E-4 0.0 0.0 49.09148160187828 0.0 24 0.0010190324694315735 0.0 0.0 49.737038671263186 0.0 25 0.0010190324694315735 0.0 0.0 50.33806402173393 0.0 26 0.0010190324694315735 0.0 0.0 50.93470753258611 0.0 27 0.0010190324694315735 0.0 0.0 51.50506000572696 0.0 28 0.0011209357163747308 0.0 0.0 52.097627386701426 0.0 29 0.0011209357163747308 0.0 0.0 52.803307371782786 0.0 30 0.0011209357163747308 0.0 0.0 53.40504604498213 0.0 31 0.0011209357163747308 0.0 0.0 53.92852302452913 0.0 32 0.0011209357163747308 0.0 0.0 54.46473790994403 0.0 33 0.0011209357163747308 0.0 0.0 54.97486556414147 0.0 34 0.0011209357163747308 0.0 0.0 55.58669265878819 0.0 35 0.0011209357163747308 0.0 0.0 56.053613336281735 0.0 36 0.0011209357163747308 0.0 0.0 56.51391030272398 0.0 37 0.0011209357163747308 0.0 0.0 56.981544302946126 0.0 38 0.0011209357163747308 0.0 0.0 57.443777431080285 0.0 39 0.0011209357163747308 0.0 0.0 57.9044820105103 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGTT 25 3.8903865E-5 45.000004 22 CGGGTAG 60 0.0 45.000004 5 GTCGCTC 25 3.8903865E-5 45.000004 16 GTCGCAA 25 3.8903865E-5 45.000004 8 CAAACGG 30 2.1651758E-6 45.000004 1 TACTTAG 30 2.1651758E-6 45.000004 22 TACTTAA 30 2.1651758E-6 45.000004 33 CTATCGG 35 1.2116834E-7 45.000004 1 CGTGCGG 25 3.8903865E-5 45.000004 1 CAACCGG 30 2.1651758E-6 45.000004 1 TTCGTCG 30 2.1651758E-6 45.000004 30 GCCATAC 25 3.8903865E-5 45.000004 12 TAGCCGT 25 3.8903865E-5 45.000004 20 CGTTATA 25 3.8903865E-5 45.000004 24 ATCGTCG 25 3.8903865E-5 45.000004 13 TAGCATA 35 1.2116834E-7 45.000004 29 ATCAACG 120 0.0 45.000004 14 GTTACGG 70 0.0 45.000004 1 GTAGCCG 25 3.8903865E-5 45.000004 19 CTAAAGT 30 2.1651758E-6 45.000004 23 >>END_MODULE