SRR1043363_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043363_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2704221
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	102805	3.801649347446085	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	12593	0.4656793952861101	No Hit
CCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	10672	0.39464230179412113	RNA PCR Primer, Index 38 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGCT	9357	0.34601461936727806	RNA PCR Primer, Index 38 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	7784	0.28784629658596694	RNA PCR Primer, Index 27 (95% over 23bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	6200	0.22927120231667455	No Hit
CGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTG	4339	0.16045286239549209	RNA PCR Primer, Index 38 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCC	3894	0.14399710674534366	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3342	0.12358457389392362	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3330	0.1231408231797623	No Hit
TCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	3235	0.11962779669265197	RNA PCR Primer, Index 27 (95% over 23bp)
GGGCCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTC	3049	0.11274966062315174	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	25	3.8922102E-5	45.000004	14
TTGCGAC	20	7.034981E-4	45.000004	11
CGTAAAA	20	7.034981E-4	45.000004	31
TGTCGAT	20	7.034981E-4	45.000004	16
CGTTTTT	24455	0.0	44.33756	1
CAACCGG	90	0.0	42.5	1
TATACGG	175	0.0	42.42857	1
ATAGCGG	340	0.0	42.35294	1
ATTACGG	230	0.0	42.065216	1
GCGATCG	75	0.0	42.0	8
CACTTAC	3425	0.0	41.715324	36
TATGCGG	530	0.0	41.603775	1
TCACGAC	375	0.0	41.4	24
CTAACGG	220	0.0	40.90909	1
ATTGCGG	545	0.0	40.871563	1
CGCACTT	3495	0.0	40.815453	34
ACCCGCA	3585	0.0	40.732216	31
GCACTTA	3500	0.0	40.692856	35
CCGCACT	3520	0.0	40.589485	33
CCCGCAC	3615	0.0	40.394188	32