SRR1043361_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043361_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2276402
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	80807	3.549768450387937	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	17787	0.781364627161635	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	10119	0.4445172689182315	No Hit
CCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	5860	0.25742377664401983	No Hit
CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT	5794	0.25452446448386534	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5269	0.23146175411900005	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4646	0.20409400448602663	No Hit
GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	4363	0.19166210537506118	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3402	0.14944636316432686	No Hit
CGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTG	3243	0.14246165659668195	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2757	0.12111217614463526	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	2322	0.10200307327088975	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	40	6.8193913E-9	45.0	37
ACACGAA	20	7.0347456E-4	45.0	27
CGTTTTT	20465	0.0	44.0215	1
GGCGATA	485	0.0	41.288662	7
CTTACTG	4745	0.0	41.15911	38
ACCCGCA	4850	0.0	40.917526	31
GCACTTA	4805	0.0	40.87929	35
CCCGCAC	4915	0.0	40.788403	32
CACTTAC	4800	0.0	40.78125	36
CGCACTT	4850	0.0	40.77835	34
CCGCACT	4860	0.0	40.648148	33
CGGTCTA	355	0.0	40.563377	30
ACAACGG	100	0.0	40.5	1
ATTACGG	200	0.0	40.5	1
ACTTACT	4835	0.0	40.25336	37
ACGGGAT	425	0.0	40.235294	4
CACGACC	600	0.0	40.125	26
AATACGG	135	0.0	40.000004	1
TCATCGG	90	0.0	40.0	1
TTATGAC	5320	0.0	39.92481	26