##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043361_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2276402 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.29453365442483 33.0 31.0 34.0 31.0 34.0 2 32.58680408820586 34.0 31.0 34.0 31.0 34.0 3 32.709792470749896 34.0 31.0 34.0 31.0 34.0 4 36.190913994979795 37.0 37.0 37.0 35.0 37.0 5 36.18076640241926 37.0 37.0 37.0 35.0 37.0 6 36.31255331878992 37.0 37.0 37.0 35.0 37.0 7 36.26162821856597 37.0 37.0 37.0 35.0 37.0 8 36.17481490527596 37.0 37.0 37.0 35.0 37.0 9 37.77687113260312 39.0 38.0 39.0 35.0 39.0 10 37.53941043805092 39.0 37.0 39.0 35.0 39.0 11 37.235479937199145 39.0 37.0 39.0 35.0 39.0 12 37.250593700058246 39.0 37.0 39.0 34.0 39.0 13 37.25943704143644 39.0 37.0 39.0 35.0 39.0 14 38.568292419353 40.0 38.0 41.0 35.0 41.0 15 38.63893591729405 40.0 38.0 41.0 35.0 41.0 16 38.54410205227372 40.0 38.0 41.0 34.0 41.0 17 38.50697504219378 40.0 37.0 41.0 34.0 41.0 18 38.352345060318875 40.0 37.0 41.0 34.0 41.0 19 38.16972353740684 40.0 37.0 41.0 34.0 41.0 20 37.94555399266035 40.0 35.0 41.0 34.0 41.0 21 37.88562389244079 40.0 35.0 41.0 34.0 41.0 22 37.85203096816819 40.0 35.0 41.0 34.0 41.0 23 37.82278613355638 40.0 35.0 41.0 34.0 41.0 24 37.72523042942328 40.0 35.0 41.0 34.0 41.0 25 37.692656657303935 40.0 35.0 41.0 34.0 41.0 26 37.65481536213727 39.0 35.0 41.0 34.0 41.0 27 37.63574140244122 39.0 35.0 41.0 34.0 41.0 28 37.51961340747373 39.0 35.0 41.0 34.0 41.0 29 37.47353411216472 39.0 35.0 41.0 34.0 41.0 30 37.35911275776423 39.0 35.0 41.0 33.0 41.0 31 37.23593240561201 39.0 35.0 41.0 33.0 41.0 32 37.019074398985765 39.0 35.0 41.0 33.0 41.0 33 36.66630234905786 39.0 35.0 41.0 32.0 41.0 34 36.40868440635705 39.0 35.0 41.0 31.0 41.0 35 36.254265722838056 39.0 35.0 41.0 31.0 41.0 36 36.184104125721205 39.0 35.0 41.0 31.0 41.0 37 36.051841458582444 38.0 35.0 41.0 31.0 41.0 38 35.91847397779478 38.0 35.0 41.0 30.0 41.0 39 35.841246844801574 38.0 35.0 41.0 30.0 41.0 40 35.718786049212746 38.0 35.0 40.0 30.0 41.0 41 35.618779108435156 38.0 35.0 40.0 29.0 41.0 42 35.500630820039696 37.0 35.0 40.0 29.0 41.0 43 35.36147789362336 37.0 35.0 40.0 29.0 41.0 44 35.21538638606011 37.0 35.0 40.0 28.0 41.0 45 35.123686413911074 36.0 35.0 40.0 28.0 41.0 46 35.00608723766716 36.0 35.0 40.0 28.0 41.0 47 34.839887243114354 36.0 35.0 40.0 27.0 41.0 48 34.74116478548165 36.0 35.0 40.0 27.0 41.0 49 34.60155060485802 35.0 34.0 39.0 27.0 41.0 50 34.45896594713939 35.0 34.0 39.0 27.0 41.0 51 34.05012866795935 35.0 34.0 39.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 6.0 14 17.0 15 34.0 16 107.0 17 188.0 18 413.0 19 865.0 20 1505.0 21 2442.0 22 3903.0 23 5867.0 24 9459.0 25 16505.0 26 26516.0 27 34488.0 28 37410.0 29 38108.0 30 40312.0 31 45809.0 32 54226.0 33 71918.0 34 160756.0 35 233832.0 36 202785.0 37 237668.0 38 364845.0 39 686313.0 40 103.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.89568538421597 17.94182222647845 23.791711657255615 27.370780732049965 2 33.013632917208824 20.353391009145135 24.731308442006288 21.901667631639754 3 27.38470621621313 21.34882151746484 31.370162212122466 19.896310054199564 4 24.0281813141967 24.27703894127663 28.931357466739176 22.76342227778749 5 22.066752708880067 32.59050905771476 26.617662433963773 18.7250757994414 6 80.91163160109683 2.165215106997797 14.299802934631053 2.6233503572743304 7 80.81538322317411 2.019283061603355 13.072076021721998 4.093257693500533 8 72.29101011157081 3.4378813583892476 17.7878511791854 6.48325735085455 9 43.93134428804754 16.49985371652283 22.00670180398717 17.56210019144246 10 29.657635162857876 16.64692791519248 31.858081305498764 21.837355616450875 11 25.509026964481667 13.77924461496695 37.61747705370141 23.094251366849967 12 21.75077161239535 15.184488504227284 39.694658500563605 23.37008138281376 13 17.881990966446175 18.595792834481784 41.35284541131136 22.169370787760688 14 18.008550335134128 17.936023602158144 40.849331532831194 23.206094529876534 15 21.724238513232724 14.533461137356232 40.38952698161397 23.352773367797074 16 21.280863397589705 17.940196854509878 36.3223191685827 24.45662057931771 17 22.151491696106397 19.64758421403601 35.31788322097766 22.883040868879924 18 22.706138898138377 24.862787855572083 32.135712409319616 20.29536083696992 19 24.09618336304396 20.932418790705682 30.833262314828403 24.138135531421952 20 23.11850015946217 24.744618920559724 32.19835512356781 19.9385257964103 21 20.995764368507846 19.289738807117548 33.827417125797645 25.887079698576965 22 22.647318004464942 21.41559355509264 31.346176993343004 24.590911447099415 23 23.17319172975599 19.691732831020182 34.19396046919657 22.94111497002726 24 25.712989182051327 18.23742027989784 31.233674895734588 24.815915642316252 25 20.18567019357741 19.513600849059173 33.85245663990806 26.448272317455352 26 19.936329347804122 18.67899430768379 33.94281853556622 27.441857808945873 27 23.75713955619438 20.629792101746528 32.976556864736544 22.636511477322546 28 23.78863662920697 21.770627507795197 29.756651066024364 24.68408479697347 29 25.08915384892475 19.159884765520324 32.42410611131075 23.326855274244178 30 29.782964520326377 19.30647574549662 28.52198337551979 22.388576358657215 31 29.531207581086292 18.97362592371646 26.933160311755127 24.56200618344212 32 29.519478545529303 19.8171061174608 26.291270171085774 24.37214516592412 33 26.635234022813194 19.503233611638016 30.236004009836577 23.625528355712216 34 24.67951618387262 23.302386836771362 28.389186092790293 23.62891088656573 35 26.562268000115974 24.363315442527288 25.961275732493643 23.113140824863095 36 26.212769097900985 24.533408422589684 26.671870785564238 22.581951693945093 37 24.903114651981504 26.72111516331474 26.551285757085086 21.82448442761867 38 23.00129766183653 22.461366665465942 27.251469643762395 27.285866028935136 39 23.948450229792453 19.822465452059873 32.34380395026889 23.885280367878785 40 21.165725561653872 19.545141851043883 34.279534106893244 25.009598480408997 41 22.419150923255206 23.12719809594263 28.252303415653294 26.201347565148865 42 21.43057333458677 18.143675853386178 30.867658700001144 29.558092112025907 43 23.87407847998728 19.11138718029592 31.549743850163548 25.464790489553252 44 24.80040871515664 20.74866390031286 30.760867368768785 23.690060015761716 45 25.272030159875104 20.78178634529402 29.656976228276026 24.28920726655485 46 24.369509427596707 20.46220307309517 29.79785644187626 25.37043105743186 47 21.89986654378269 21.744533698353806 31.876663260707026 24.47893649715648 48 23.59429485653237 19.83054838293061 29.65767909183 26.91747766870702 49 22.621663484744786 17.979469355588336 33.368974372716245 26.029892786950636 50 22.09600940431435 18.357302444823016 34.49799288526367 25.04869526559896 51 21.173544918691867 16.879180390809708 33.07754957164859 28.869725118849832 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 535.0 1 3403.5 2 6272.0 3 56795.0 4 107318.0 5 61871.0 6 16424.0 7 14804.5 8 13185.0 9 12741.0 10 12297.0 11 11931.5 12 11566.0 13 10935.5 14 10305.0 15 9564.5 16 8824.0 17 8183.5 18 7543.0 19 7268.5 20 6994.0 21 6483.0 22 5972.0 23 6155.5 24 6339.0 25 6482.0 26 7448.0 27 8271.0 28 8899.5 29 9528.0 30 11493.5 31 13459.0 32 15197.0 33 16935.0 34 19460.0 35 21985.0 36 25174.5 37 28364.0 38 30945.0 39 33526.0 40 37650.0 41 41774.0 42 48533.0 43 55292.0 44 62661.0 45 70030.0 46 80568.5 47 91107.0 48 122183.5 49 153260.0 50 183277.5 51 213295.0 52 216190.0 53 219085.0 54 200285.0 55 181485.0 56 168777.5 57 156070.0 58 148374.5 59 140679.0 60 135167.0 61 129655.0 62 127366.5 63 125078.0 64 118563.0 65 112048.0 66 93829.0 67 75610.0 68 63268.0 69 50926.0 70 43745.0 71 36564.0 72 33291.0 73 30018.0 74 25493.0 75 15823.5 76 10679.0 77 7967.5 78 5256.0 79 4070.5 80 2885.0 81 2021.5 82 1158.0 83 924.5 84 691.0 85 498.0 86 305.0 87 189.5 88 74.0 89 79.0 90 84.0 91 65.5 92 47.0 93 28.0 94 9.0 95 5.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2276402.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.691025015879816 #Duplication Level Percentage of deduplicated Percentage of total 1 74.23492128641789 19.814061411076487 2 10.143176580990787 5.414635597274228 3 3.6002715132953966 2.8828481107598076 4 1.8215974424438608 1.9448121162052714 5 1.0919688944177952 1.4572884538734 6 0.7795924122936422 1.2484872347231817 7 0.5975296413181721 1.1164075022907118 8 0.4832161791721966 1.031802810109037 9 0.4337392004691562 1.0419249465080962 >10 5.999612774629765 37.299463442749726 >50 0.6659164732938766 11.554029051530565 >100 0.1363082735487762 6.204808674911876 >500 0.006823595014404423 1.2575767749746882 >1k 0.00432715781401256 2.150896059493974 >5k 4.992874400783723E-4 0.7517475013386312 >10k+ 4.992874400783723E-4 4.8292103121802645 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 80807 3.549768450387937 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 17787 0.781364627161635 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 10119 0.4445172689182315 No Hit CCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC 5860 0.25742377664401983 No Hit CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT 5794 0.25452446448386534 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5269 0.23146175411900005 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4646 0.20409400448602663 No Hit GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC 4363 0.19166210537506118 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3402 0.14944636316432686 No Hit CGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTG 3243 0.14246165659668195 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2757 0.12111217614463526 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 2322 0.10200307327088975 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2644524121837883 0.0 2 0.0 0.0 0.0 0.8543745788309798 0.0 3 0.0 0.0 0.0 1.436345601523808 0.0 4 0.0 0.0 0.0 1.826303087064587 0.0 5 0.0 0.0 0.0 3.8336374682503354 0.0 6 0.0 0.0 0.0 4.485235911758995 0.0 7 0.0 0.0 0.0 6.522222349128142 0.0 8 0.0 0.0 0.0 8.809955359378527 0.0 9 0.0 0.0 0.0 10.908530215664896 0.0 10 0.0 0.0 0.0 12.07664551340229 0.0 11 0.0 0.0 0.0 13.050287251548715 0.0 12 0.0 0.0 0.0 13.7672080766051 0.0 13 0.0 0.0 0.0 14.129182806903174 0.0 14 0.0 0.0 0.0 14.355812374088584 0.0 15 0.0 0.0 0.0 15.009475479287051 0.0 16 0.0 0.0 0.0 15.731755638942508 0.0 17 4.392897212355287E-5 0.0 0.0 16.640909646011558 0.0 18 4.392897212355287E-5 0.0 0.0 17.150793225449636 0.0 19 4.392897212355287E-5 0.0 0.0 17.703858984485166 0.0 20 4.392897212355287E-5 0.0 0.0 18.307970209128264 0.0 21 4.392897212355287E-5 0.0 0.0 18.93009231234202 0.0 22 8.785794424710574E-5 0.0 0.0 19.5324903070723 0.0 23 8.785794424710574E-5 0.0 0.0 20.076550626822502 0.0 24 8.785794424710574E-5 0.0 0.0 20.51865180227394 0.0 25 8.785794424710574E-5 0.0 0.0 20.94612463000823 0.0 26 8.785794424710574E-5 0.0 0.0 21.36973170819565 0.0 27 8.785794424710574E-5 0.0 0.0 21.815962207026704 0.0 28 8.785794424710574E-5 0.0 0.0 22.268869909620534 0.0 29 8.785794424710574E-5 0.0 0.0 22.734165582353207 0.0 30 8.785794424710574E-5 0.0 0.0 23.169238122264872 0.0 31 8.785794424710574E-5 0.0 0.0 23.617840785590595 0.0 32 8.785794424710574E-5 0.0 0.0 24.093152263967436 0.0 33 8.785794424710574E-5 0.0 0.0 24.539250975882116 0.0 34 8.785794424710574E-5 0.0 0.0 25.033979059937568 0.0 35 8.785794424710574E-5 0.0 0.0 25.455345760546688 0.0 36 8.785794424710574E-5 0.0 0.0 25.904914861259126 0.0 37 8.785794424710574E-5 0.0 0.0 26.42696676597543 0.0 38 8.785794424710574E-5 0.0 0.0 26.99597874189181 0.0 39 8.785794424710574E-5 0.0 0.0 27.6823250023502 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTA 40 6.8193913E-9 45.0 37 ACACGAA 20 7.0347456E-4 45.0 27 CGTTTTT 20465 0.0 44.0215 1 GGCGATA 485 0.0 41.288662 7 CTTACTG 4745 0.0 41.15911 38 ACCCGCA 4850 0.0 40.917526 31 GCACTTA 4805 0.0 40.87929 35 CCCGCAC 4915 0.0 40.788403 32 CACTTAC 4800 0.0 40.78125 36 CGCACTT 4850 0.0 40.77835 34 CCGCACT 4860 0.0 40.648148 33 CGGTCTA 355 0.0 40.563377 30 ACAACGG 100 0.0 40.5 1 ATTACGG 200 0.0 40.5 1 ACTTACT 4835 0.0 40.25336 37 ACGGGAT 425 0.0 40.235294 4 CACGACC 600 0.0 40.125 26 AATACGG 135 0.0 40.000004 1 TCATCGG 90 0.0 40.0 1 TTATGAC 5320 0.0 39.92481 26 >>END_MODULE