##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043360_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1033644 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.16651864665204 33.0 31.0 34.0 30.0 34.0 2 32.515600148600484 34.0 31.0 34.0 31.0 34.0 3 32.59607756635747 34.0 31.0 34.0 31.0 34.0 4 36.14792907422672 37.0 35.0 37.0 35.0 37.0 5 36.038900240314845 37.0 35.0 37.0 35.0 37.0 6 36.25123253267082 37.0 36.0 37.0 35.0 37.0 7 36.17227885035854 37.0 37.0 37.0 35.0 37.0 8 36.16153433870849 37.0 37.0 37.0 35.0 37.0 9 37.728083363324316 39.0 38.0 39.0 35.0 39.0 10 37.55934441645286 39.0 37.0 39.0 35.0 39.0 11 37.2547443800767 39.0 37.0 39.0 34.0 39.0 12 37.268511208888164 39.0 37.0 39.0 34.0 39.0 13 37.27437106005549 39.0 37.0 39.0 34.0 39.0 14 38.68562870775625 40.0 38.0 41.0 35.0 41.0 15 38.78011771944693 40.0 38.0 41.0 35.0 41.0 16 38.791085712295526 41.0 38.0 41.0 35.0 41.0 17 38.76510094384527 41.0 38.0 41.0 35.0 41.0 18 38.44292619122251 40.0 38.0 41.0 35.0 41.0 19 38.11404893754523 40.0 37.0 41.0 34.0 41.0 20 37.77812477023037 39.0 35.0 41.0 34.0 41.0 21 37.73256362925727 39.0 35.0 41.0 34.0 41.0 22 37.67371454775532 39.0 35.0 41.0 34.0 41.0 23 37.68215749329556 39.0 35.0 41.0 34.0 41.0 24 37.58239006853423 39.0 35.0 41.0 34.0 41.0 25 37.490242288447476 39.0 35.0 41.0 34.0 41.0 26 37.426559821369835 39.0 35.0 41.0 34.0 41.0 27 37.453091199678035 39.0 35.0 41.0 34.0 41.0 28 37.431177465355574 39.0 35.0 41.0 33.0 41.0 29 37.35850544287975 39.0 35.0 41.0 33.0 41.0 30 37.309287336839375 39.0 35.0 41.0 33.0 41.0 31 37.11437206620461 39.0 35.0 41.0 33.0 41.0 32 36.837073499193146 39.0 35.0 41.0 32.0 41.0 33 36.49295598871565 39.0 35.0 41.0 31.0 41.0 34 36.160488524095335 39.0 35.0 41.0 30.0 41.0 35 35.903871158735505 39.0 35.0 41.0 29.0 41.0 36 35.84507528704273 39.0 35.0 41.0 28.0 41.0 37 35.698379712937914 39.0 35.0 41.0 27.0 41.0 38 35.65461899841725 39.0 35.0 41.0 27.0 41.0 39 35.60426510481365 39.0 35.0 41.0 26.0 41.0 40 35.560254787915376 39.0 35.0 41.0 26.0 41.0 41 35.53248990948528 39.0 35.0 41.0 26.0 41.0 42 35.47707334440097 39.0 35.0 41.0 26.0 41.0 43 35.36103532744349 38.0 35.0 41.0 25.0 41.0 44 35.20009984095104 38.0 35.0 41.0 24.0 41.0 45 35.15029255720538 38.0 35.0 41.0 23.0 41.0 46 35.13702880295344 38.0 35.0 41.0 23.0 41.0 47 35.03465409754229 38.0 35.0 40.0 23.0 41.0 48 34.973443467963826 38.0 35.0 40.0 23.0 41.0 49 34.88718456257667 38.0 35.0 40.0 23.0 41.0 50 34.741525128574246 38.0 35.0 40.0 23.0 41.0 51 34.637580250066755 37.0 35.0 40.0 23.0 41.0 52 34.28590694668571 37.0 34.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 1.0 14 4.0 15 15.0 16 36.0 17 85.0 18 241.0 19 473.0 20 901.0 21 1341.0 22 2259.0 23 3790.0 24 7108.0 25 13536.0 26 19015.0 27 20164.0 28 18057.0 29 16882.0 30 17413.0 31 20033.0 32 24209.0 33 31012.0 34 54643.0 35 93867.0 36 109098.0 37 78782.0 38 129600.0 39 370463.0 40 612.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.36917933060125 18.971812345449692 25.256761515570158 30.4022468083789 2 36.09202007654473 18.520786653818917 24.987036155581613 20.400157114054743 3 20.374229425217965 20.84711951116632 39.69219576566013 19.08645529795558 4 21.601634605338006 23.308315048507996 37.67844635096803 17.411603995185963 5 19.623777625565474 28.751678527616857 33.87945946573482 17.745084381082847 6 71.1800194264176 1.527605249002558 23.598743861522923 3.693631463056913 7 71.56216260143724 1.139850857742124 20.514122850807436 6.783863690013196 8 60.15339904261041 3.104937483311469 28.165499920669014 8.576163553409105 9 33.62008583225946 17.29705778778767 31.41110479043075 17.671751589522117 10 25.718622659252123 19.539996362383956 42.92338561438948 11.817995363974445 11 22.82449276540085 16.020796328329677 42.256715077918514 18.89799582835096 12 18.97897148341208 18.085143434296526 44.66847386527663 18.267411217014757 13 13.48520380324367 21.370026817743828 43.59740877903804 21.54736059997446 14 12.464929898495033 21.42014078348058 45.62876580331333 20.486163514711063 15 13.616099933826348 17.930641497459472 48.205378254021696 20.247880314692484 16 14.189798421893803 23.7269311290928 41.445604095800874 20.63766635321252 17 15.705697512876773 21.14344977574484 43.2161363099868 19.93471640139158 18 17.40570254362237 27.350035408709385 39.8362492308764 15.408012816791855 19 16.719973220954216 23.22317935382008 38.063298389000465 21.99354903622524 20 14.1959901087802 28.743358448363267 36.643370444756606 20.417280998099926 21 14.610252659523008 23.306283401248397 38.223798522508716 23.859665416719878 22 12.9231147280882 26.127757719292134 35.17758531951039 25.771542233109273 23 12.332002120652758 22.749708797226123 43.71185824132874 21.206430840792382 24 16.511100533646015 21.68628657448793 40.73849410435314 21.064118787512914 25 13.493427137389663 24.773906683539014 40.400079717968666 21.33258646110266 26 16.053883155128844 22.19042533019105 38.72619586627504 23.02949564840506 27 20.41263723293513 22.982090545681107 38.967381419521615 17.63789080186215 28 16.489429629543633 22.87151088769441 35.85809040636815 24.78096907639381 29 17.29609033671167 27.110881502722407 33.86920448432923 21.72382367623669 30 23.39857823389871 23.433890198172676 31.108002368320236 22.059529199608377 31 19.562924952885133 24.74527013168944 31.04840738203869 24.64339753338674 32 19.461439335012827 28.776445275162438 30.24174667487065 21.520368714954085 33 18.73207796881712 27.18595570621994 31.11980527144742 22.962161053515523 34 21.778678152245842 24.679096478091104 30.607443181598303 22.93478218806475 35 18.438650057466592 28.389464844762802 29.370460235825874 23.80142486194473 36 23.503546675644614 28.402428689181185 28.943330585772276 19.150694049401924 37 20.417958213853126 25.994926686557463 32.594877927023234 20.992237172566185 38 21.713955675261502 23.2018954301481 29.94580339072253 25.13834550386787 39 24.987036155581613 22.011350136023623 32.100123446757294 20.90149026163747 40 20.51093026225664 19.85993243321685 36.829895012209235 22.799242292317278 41 21.52520597033408 22.450476179419606 31.455027069281105 24.569290780965204 42 21.148480521340034 19.19123024948628 36.11620635344471 23.544082875728975 43 22.50107387069436 23.279098026012825 33.806223419281686 20.41360468401113 44 17.29512288563567 26.10241050110096 34.79099186954115 21.811474743722208 45 19.984830367128335 23.280549202626823 34.07101477878264 22.663605651462206 46 23.742313601201186 20.206183173316923 32.672370758210754 23.37913246727113 47 18.98477618986808 19.22915433166545 35.906172724845305 25.879896753621168 48 20.04249045125788 17.783105208369612 32.436022460344184 29.738381880028324 49 20.420570331758324 18.377120169033052 36.96369349601991 24.238616003188717 50 19.336928381531745 17.613994760284974 38.12047474759201 24.928602110591267 51 17.274709667932093 16.48169002093564 38.05023779947448 28.19336251165779 52 16.077488961383224 16.725294201872213 43.75800565765389 23.439211179090673 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 226.0 1 1230.5 2 2235.0 3 43304.5 4 84374.0 5 46863.0 6 9352.0 7 8952.5 8 8553.0 9 8901.0 10 9249.0 11 9470.5 12 9692.0 13 9455.5 14 8697.0 15 8175.0 16 7430.5 17 6686.0 18 6222.5 19 5759.0 20 5270.5 21 4782.0 22 4514.0 23 4246.0 24 4110.5 25 3975.0 26 4186.0 27 4397.0 28 4629.0 29 4861.0 30 5276.5 31 5692.0 32 7170.0 33 8648.0 34 9737.0 35 10826.0 36 12219.0 37 13612.0 38 15260.5 39 19903.0 40 22897.0 41 27553.0 42 32209.0 43 38192.5 44 44176.0 45 51955.0 46 59734.0 47 76662.5 48 93591.0 49 117604.0 50 141617.0 51 144374.0 52 147131.0 53 128993.5 54 110856.0 55 87091.5 56 63327.0 57 48898.0 58 34469.0 59 26951.5 60 19434.0 61 15024.5 62 10615.0 63 9000.5 64 5980.5 65 4575.0 66 3806.0 67 3037.0 68 2495.5 69 1954.0 70 1771.0 71 1588.0 72 1531.5 73 1475.0 74 1231.0 75 987.0 76 766.0 77 545.0 78 432.0 79 319.0 80 221.0 81 123.0 82 103.0 83 83.0 84 55.0 85 27.0 86 19.0 87 11.0 88 8.0 89 4.0 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1033644.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.593612256781114 #Duplication Level Percentage of deduplicated Percentage of total 1 76.56275756869209 27.251451062099598 2 11.08043978243453 7.887857545011736 3 3.963959058979642 4.2327486524122895 4 1.8825557995368436 2.680278447218759 5 1.1483455357943784 2.0436882868935333 6 0.7500627322945468 1.6018465236932349 7 0.5349847950754266 1.3329428951431765 8 0.4164771000609234 1.1859139530717713 9 0.33820652477379953 1.0834192714960853 >10 2.8438537434577844 21.043948524815907 >50 0.3209961337921215 7.839263934771414 >100 0.14645230135721823 9.247758274680496 >500 0.006272631156666765 1.4800567920888734 >1k 0.0038181233127536833 2.693456798720402 >5k 5.454461875362404E-4 1.0678890778362757 >10k+ 2.727230937681202E-4 7.327479960046476 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 75485 7.302804447179106 No Hit CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT 5528 0.5348069548122951 No Hit CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCTT 5473 0.5294859738943001 Illumina Single End Adapter 1 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 3815 0.3690825854936516 No Hit GCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT 3797 0.36734117355685325 No Hit CGTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT 2677 0.2589866530449555 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTC 2455 0.23750923915777578 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT 1974 0.19097484240221974 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCG 1964 0.19000739132622063 No Hit TCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT 1839 0.17791425287623205 No Hit CGTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG 1633 0.15798476071065087 No Hit GCCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 1525 0.14753628908986072 No Hit ACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 1432 0.13853899408306922 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCT 1390 0.13447569956387306 No Hit AGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 1148 0.11106338352469516 No Hit TCCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 1083 0.1047749515307011 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5438042498190866 0.0 2 0.0 0.0 0.0 1.7505059769127476 0.0 3 0.0 0.0 0.0 3.069238538607103 0.0 4 0.0 0.0 0.0 3.9199182697330994 0.0 5 0.0 0.0 0.0 8.275673249203788 0.0 6 0.0 0.0 0.0 9.79853798793395 0.0 7 0.0 0.0 0.0 14.03713464210115 0.0 8 0.0 0.0 0.0 18.978777993196886 0.0 9 0.0 0.0 0.0 23.112696440940983 0.0 10 9.674510759990867E-5 0.0 0.0 25.28588179295773 0.0 11 9.674510759990867E-5 0.0 0.0 27.136809191559184 0.0 12 9.674510759990867E-5 0.0 0.0 28.41307065101718 0.0 13 9.674510759990867E-5 0.0 0.0 29.01792106373181 0.0 14 9.674510759990867E-5 0.0 0.0 29.44176138012701 0.0 15 9.674510759990867E-5 0.0 0.0 30.642368165441873 0.0 16 9.674510759990867E-5 0.0 0.0 32.06200587436293 0.0 17 9.674510759990867E-5 0.0 0.0 33.62463285231666 0.0 18 9.674510759990867E-5 0.0 0.0 34.503852390184626 0.0 19 9.674510759990867E-5 0.0 0.0 35.49568323329889 0.0 20 9.674510759990867E-5 0.0 0.0 36.56790926082868 0.0 21 9.674510759990867E-5 0.0 0.0 37.65861360391005 0.0 22 2.9023532279972604E-4 0.0 0.0 38.691270882431475 0.0 23 3.869804303996347E-4 0.0 0.0 39.50189813901111 0.0 24 9.674510759990867E-4 0.0 0.0 40.23803166273881 0.0 25 9.674510759990867E-4 0.0 0.0 40.90499243453259 0.0 26 9.674510759990867E-4 0.0 0.0 41.610844739581516 0.0 27 9.674510759990867E-4 0.0 0.0 42.27693480540689 0.0 28 9.674510759990867E-4 0.0 0.0 42.951248205378256 0.0 29 9.674510759990867E-4 0.0 0.0 43.7485246371091 0.0 30 9.674510759990867E-4 0.0 0.0 44.43231905762526 0.0 31 9.674510759990867E-4 0.0 0.0 45.03001033237749 0.0 32 9.674510759990867E-4 0.0 0.0 45.63892403961132 0.0 33 9.674510759990867E-4 0.0 0.0 46.23932417737635 0.0 34 9.674510759990867E-4 0.0 0.0 46.89109596727693 0.0 35 9.674510759990867E-4 0.0 0.0 47.455700415230005 0.0 36 9.674510759990867E-4 0.0 0.0 47.981993800573505 0.0 37 9.674510759990867E-4 0.0 0.0 48.531215776418186 0.0 38 9.674510759990867E-4 0.0 0.0 49.076374457743675 0.0 39 9.674510759990867E-4 0.0 0.0 49.61040745169517 0.0 40 9.674510759990867E-4 0.0 0.0 50.13844224897547 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGATG 35 1.0194344E-7 46.000004 46 CATCGCG 35 1.0194344E-7 46.000004 18 ACATCGC 35 1.0194344E-7 46.000004 17 TTCGCGA 35 1.0194344E-7 46.000004 44 TCGCGAT 35 1.0194344E-7 46.000004 45 ATCGATC 35 1.0194344E-7 46.000004 42 TCACGAC 185 0.0 46.0 24 AGATCGT 25 3.416915E-5 46.0 42 CTCCGTG 20 6.3111575E-4 46.0 34 GATCGCG 20 6.3111575E-4 46.0 8 CGACGGT 180 0.0 46.0 27 TAGACGG 105 0.0 46.0 1 TAGCGGA 20 6.3111575E-4 46.0 2 ATTGTCG 20 6.3111575E-4 46.0 21 CTAAGCA 20 6.3111575E-4 46.0 18 TCGGCTA 25 3.416915E-5 46.0 37 TATTGGT 30 1.8612209E-6 46.0 22 GCCGACA 40 5.6097633E-9 46.0 8 AATTGCG 25 3.416915E-5 46.0 26 AGACCCG 20 6.3111575E-4 46.0 38 >>END_MODULE