FastQCFastQC Report
Thu 26 May 2016
SRR1043359_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043359_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1001177
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT686126.853133861445079No Hit
CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC53360.5329726911425253No Hit
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT53210.5314744545669747No Hit
GCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC39670.39623363301394254No Hit
CGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG36520.3647706649273805No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTC25480.254500452966858No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT23480.23452396529285033No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCT19490.19467087238320496No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCC18820.1879787490124124No Hit
TCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC18640.1861808651217517No Hit
GCCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG14800.14782600878765692No Hit
CGTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT14790.1477261263492869No Hit
ACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG14270.14253223955404487No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTC12740.127250226483429No Hit
AGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG11970.11955927872893603No Hit
TCCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG10560.10547585491876063No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCACGAC1300.045.00000424
TTCGATT850.045.00000439
TAGTCGG302.1652195E-645.0000041
TACACGG600.045.0000041
TCGCAGT253.8904447E-545.040
CATGCGG1450.045.01
AACTTCG1100.045.010
CGCGCAG502.1827873E-1145.034
GTTAGTA207.03285E-445.029
CTAAGCA253.8904447E-545.018
TACGGAA207.03285E-445.03
AGACGGT253.8904447E-545.02
CCATCGA253.8904447E-545.040
ACATACG406.8139343E-945.016
GCCGTGG207.03285E-445.013
GCCCGAC207.03285E-445.08
ATCGATC253.8904447E-545.042
GTACGAC207.03285E-445.08
ACGGTAG207.03285E-445.04
CGTTTTT146700.044.6165661