SRR1043359_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043359_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1001177
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	68612	6.853133861445079	No Hit
CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	5336	0.5329726911425253	No Hit
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	5321	0.5314744545669747	No Hit
GCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	3967	0.39623363301394254	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG	3652	0.3647706649273805	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTC	2548	0.254500452966858	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT	2348	0.23452396529285033	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCT	1949	0.19467087238320496	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCC	1882	0.1879787490124124	No Hit
TCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	1864	0.1861808651217517	No Hit
GCCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG	1480	0.14782600878765692	No Hit
CGTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	1479	0.1477261263492869	No Hit
ACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG	1427	0.14253223955404487	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTC	1274	0.127250226483429	No Hit
AGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG	1197	0.11955927872893603	No Hit
TCCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG	1056	0.10547585491876063	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	130	0.0	45.000004	24
TTCGATT	85	0.0	45.000004	39
TAGTCGG	30	2.1652195E-6	45.000004	1
TACACGG	60	0.0	45.000004	1
TCGCAGT	25	3.8904447E-5	45.0	40
CATGCGG	145	0.0	45.0	1
AACTTCG	110	0.0	45.0	10
CGCGCAG	50	2.1827873E-11	45.0	34
GTTAGTA	20	7.03285E-4	45.0	29
CTAAGCA	25	3.8904447E-5	45.0	18
TACGGAA	20	7.03285E-4	45.0	3
AGACGGT	25	3.8904447E-5	45.0	2
CCATCGA	25	3.8904447E-5	45.0	40
ACATACG	40	6.8139343E-9	45.0	16
GCCGTGG	20	7.03285E-4	45.0	13
GCCCGAC	20	7.03285E-4	45.0	8
ATCGATC	25	3.8904447E-5	45.0	42
GTACGAC	20	7.03285E-4	45.0	8
ACGGTAG	20	7.03285E-4	45.0	4
CGTTTTT	14670	0.0	44.616566	1