##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043359_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1001177 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.12597872304298 33.0 31.0 34.0 30.0 34.0 2 32.45337437835668 34.0 31.0 34.0 31.0 34.0 3 32.51188551075384 34.0 31.0 34.0 31.0 34.0 4 36.107446535427805 37.0 35.0 37.0 35.0 37.0 5 36.06004532665053 37.0 35.0 37.0 35.0 37.0 6 36.2654056175881 37.0 37.0 37.0 35.0 37.0 7 36.197343726433985 37.0 37.0 37.0 35.0 37.0 8 36.103557113277674 37.0 37.0 37.0 35.0 37.0 9 37.67915763146776 39.0 38.0 39.0 35.0 39.0 10 37.50348439886254 39.0 37.0 39.0 35.0 39.0 11 37.24669563923263 39.0 37.0 39.0 34.0 39.0 12 37.267404265179884 39.0 37.0 39.0 34.0 39.0 13 37.27986060406901 39.0 37.0 39.0 34.0 39.0 14 38.685532128684535 40.0 38.0 41.0 35.0 41.0 15 38.793417148016786 40.0 38.0 41.0 35.0 41.0 16 38.838285338156986 40.0 38.0 41.0 35.0 41.0 17 38.79658142366435 40.0 38.0 41.0 35.0 41.0 18 38.50818886170977 40.0 38.0 41.0 35.0 41.0 19 38.201739552546655 40.0 37.0 41.0 35.0 41.0 20 37.893169739216944 40.0 35.0 41.0 34.0 41.0 21 37.84856823518719 40.0 35.0 41.0 34.0 41.0 22 37.80473782358165 40.0 35.0 41.0 34.0 41.0 23 37.77566304459651 39.0 35.0 41.0 34.0 41.0 24 37.68110833548913 39.0 35.0 41.0 34.0 41.0 25 37.65832914659446 39.0 35.0 41.0 34.0 41.0 26 37.626946084458595 39.0 35.0 41.0 34.0 41.0 27 37.60998604642336 39.0 35.0 41.0 34.0 41.0 28 37.524235974258296 39.0 35.0 41.0 34.0 41.0 29 37.50521835799264 39.0 35.0 41.0 34.0 41.0 30 37.408197551481905 39.0 35.0 41.0 33.0 41.0 31 37.199498190629626 39.0 35.0 41.0 33.0 41.0 32 36.943812133119316 39.0 35.0 41.0 33.0 41.0 33 36.557049352911626 39.0 35.0 41.0 31.0 41.0 34 36.196687498813894 39.0 35.0 41.0 30.0 41.0 35 35.936870303652604 39.0 35.0 41.0 29.0 41.0 36 35.87358279305258 39.0 35.0 41.0 29.0 41.0 37 35.6930472833475 39.0 35.0 41.0 27.0 41.0 38 35.63916070784686 39.0 35.0 41.0 27.0 41.0 39 35.544911639000894 39.0 35.0 41.0 26.0 41.0 40 35.48620473702452 39.0 35.0 41.0 26.0 41.0 41 35.418402540210174 38.0 35.0 40.0 25.0 41.0 42 35.34844288272703 38.0 35.0 40.0 25.0 41.0 43 35.220900000699174 38.0 35.0 40.0 24.0 41.0 44 35.131885770448186 38.0 35.0 40.0 24.0 41.0 45 35.09674313333207 38.0 35.0 40.0 23.0 41.0 46 35.01989458407454 38.0 35.0 40.0 23.0 41.0 47 34.858209886963046 38.0 35.0 40.0 23.0 41.0 48 34.82477823601621 38.0 35.0 40.0 23.0 41.0 49 34.717092981560704 38.0 35.0 40.0 23.0 41.0 50 34.60862764526153 38.0 35.0 40.0 23.0 41.0 51 34.139200161410024 37.0 34.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 3.0 15 8.0 16 34.0 17 65.0 18 168.0 19 373.0 20 705.0 21 1140.0 22 1826.0 23 3091.0 24 5545.0 25 10934.0 26 17592.0 27 20022.0 28 18957.0 29 17122.0 30 17369.0 31 19643.0 32 23375.0 33 30428.0 34 54092.0 35 91248.0 36 99833.0 37 77463.0 38 136235.0 39 353850.0 40 55.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.87154918660736 18.988051063897792 25.32329448239422 29.817105267100626 2 35.672513451667385 18.650348539768693 25.062301670933312 20.61483633763061 3 20.637609533578978 20.937756260880942 39.225531549366394 19.199102656173682 4 21.8893362512323 23.566861803657098 36.985967516233394 17.55783442887721 5 19.83135849105603 29.012252578714854 33.19123391767889 17.96515501255023 6 71.78950375408144 1.5126196466758624 22.941597739460654 3.7562788597820362 7 72.17524973106654 1.0952109367274718 19.908267968600956 6.821271363605037 8 60.58998558696415 3.040221659107231 27.56525569404811 8.804537059880522 9 34.02255545223272 17.342787539066517 30.82651718926823 17.80813981943253 10 26.105773504585105 19.598033115023618 42.50137588058855 11.79481749980273 11 23.176221587191876 16.051707140695402 41.83775696005801 18.934314312054713 12 19.328750061177992 17.911118613392038 44.29586376834466 18.46426755708531 13 13.730239508098968 21.32440117981136 43.179377872244366 21.7659814398453 14 12.66938813017079 21.296733744382863 45.20739090090963 20.82648722453672 15 13.725345268618835 17.954567474083007 47.87704871366402 20.44303854363414 16 14.393558781314391 23.63328362517317 41.12779258812378 20.845365005388658 17 15.97150154268426 21.129730307428158 42.94844967473284 19.950318475154745 18 17.66001416332976 27.225255873836495 39.5465537062877 15.568176256546046 19 16.82050226882959 23.26022271786108 37.73678380546097 22.18249120784836 20 14.35969863470695 28.783322029970726 36.2188703895515 20.638108945770828 21 14.745244846815297 23.357308447956754 37.77613748617877 24.121309219049177 22 13.14013406220878 26.2301271403558 34.664000471445114 25.965738325990312 23 12.486603267953617 22.75092216461225 43.22202767342838 21.540446894005754 24 16.654897186012064 21.612062602317074 40.445096121864566 21.2879440898063 25 13.606185519643379 24.71790702343342 40.125572201518814 21.55033525540439 26 16.25217119450407 22.108977733208015 38.35235927313552 23.286491799152397 27 20.660083082212235 22.924417960061007 38.61015584656859 17.805343111158166 28 16.77036128476783 22.885863338850175 35.46106232963802 24.88271304674398 29 17.538657000710163 27.179709481939756 33.23877795834303 22.042855559007048 30 23.745451603462726 23.354012327490544 30.531264701446396 22.369271367600334 31 19.889490070187392 24.598947039334703 30.498703026537765 25.01285986394014 32 19.60033041110613 28.783621677285836 29.760172277229703 21.855875634378336 33 19.00932602327061 27.13306438322095 30.602680644880977 23.254928948627466 34 22.097291487918717 24.59205515108717 30.227322441486372 23.083330919507738 35 18.619384983873978 28.323363401276698 28.907975313056532 24.149276301792792 36 23.73256676891299 28.38888628084744 28.51943262779708 19.359114322442487 37 20.756369752800953 25.894022735240625 32.17293245849635 21.176675053462073 38 21.99171575056159 23.147854974694784 29.44943801146051 25.410991263283115 39 25.408494202323865 21.799042526945787 31.710676533719813 21.08178673701054 40 20.88312056709253 19.569067207896307 36.50453416328981 23.043278061721352 41 21.776868625627635 22.20286722527585 31.126464151693455 24.893799997403057 42 21.45075246434946 19.015618616887924 35.75901164329584 23.774617275466774 43 22.85020530835207 23.13656825915897 33.4955757073924 20.517650725096562 44 17.515783922323426 25.812119135777188 34.65740823051269 22.014688711386697 45 20.24856743612768 23.103107642305005 33.82109257404036 22.82723234752696 46 24.12740204778975 20.003655697244344 32.40036477066493 23.46857748430098 47 19.29049508728227 18.96028374603092 35.672113921913905 26.0771072447729 48 20.41147569310921 17.515284510131576 31.89226280667654 30.180976990082677 49 20.735294558304876 18.054549794891415 36.61180790209923 24.598347744704483 50 19.686628837857842 17.327805173311013 37.85963920465612 25.12592678417502 51 17.561130549343424 16.41328156759494 37.5303268053501 28.495261077711532 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 150.0 1 1030.0 2 1910.0 3 39609.0 4 77308.0 5 43431.0 6 9554.0 7 9032.5 8 8511.0 9 8753.5 10 8996.0 11 9020.5 12 9045.0 13 8717.5 14 8390.0 15 7845.0 16 7300.0 17 6623.5 18 5947.0 19 5470.0 20 4993.0 21 4627.0 22 4261.0 23 3975.0 24 3689.0 25 3671.5 26 3774.5 27 3895.0 28 4103.5 29 4312.0 30 5376.0 31 6440.0 32 7564.0 33 8688.0 34 9910.0 35 11132.0 36 12757.0 37 14382.0 38 16876.0 39 19370.0 40 22960.5 41 26551.0 42 31834.5 43 37118.0 44 42364.0 45 47610.0 46 55675.5 47 63741.0 48 85176.5 49 106612.0 50 130158.5 51 153705.0 52 149483.5 53 145262.0 54 116873.0 55 88484.0 56 67251.5 57 46019.0 58 35707.5 59 25396.0 60 19339.5 61 13283.0 62 10958.5 63 8634.0 64 6999.0 65 5364.0 66 4396.0 67 3428.0 68 2948.0 69 2468.0 70 2084.0 71 1700.0 72 1600.0 73 1500.0 74 1273.5 75 835.0 76 623.0 77 480.5 78 338.0 79 270.5 80 203.0 81 148.5 82 94.0 83 66.0 84 38.0 85 26.5 86 15.0 87 11.0 88 7.0 89 4.5 90 2.0 91 2.0 92 2.0 93 2.5 94 3.0 95 2.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1001177.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.320567059762254 #Duplication Level Percentage of deduplicated Percentage of total 1 76.18912993733247 26.91043273176491 2 11.139196620126906 7.868854824261389 3 3.9777170409218154 4.214856644659141 4 1.9913752827956641 2.813460168685491 5 1.1550609368979556 2.039870363990803 6 0.7613955611016949 1.6135753784938633 7 0.5687639968508442 1.4062346824364058 8 0.43681232107082624 1.2342767103130015 9 0.3514836721863145 1.117314235248139 >10 2.9424390942092336 21.50863322708256 >50 0.32603076221826993 7.84719377751394 >100 0.14948981649168264 9.289092793710028 >500 0.006549077674821801 1.5366497996408326 >1k 0.003701652598812323 2.6272598151722932 >5k 5.694850152018958E-4 1.0718029265509754 >10k+ 2.847425076009479E-4 6.900491920476261 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 68612 6.853133861445079 No Hit CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 5336 0.5329726911425253 No Hit CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT 5321 0.5314744545669747 No Hit GCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 3967 0.39623363301394254 No Hit CGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG 3652 0.3647706649273805 No Hit CGTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTC 2548 0.254500452966858 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT 2348 0.23452396529285033 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCT 1949 0.19467087238320496 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCC 1882 0.1879787490124124 No Hit TCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 1864 0.1861808651217517 No Hit GCCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG 1480 0.14782600878765692 No Hit CGTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT 1479 0.1477261263492869 No Hit ACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG 1427 0.14253223955404487 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTC 1274 0.127250226483429 No Hit AGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG 1197 0.11955927872893603 No Hit TCCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG 1056 0.10547585491876063 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5441595242399696 0.0 2 0.0 0.0 0.0 1.7856982331795477 0.0 3 0.0 0.0 0.0 3.103746889910575 0.0 4 0.0 0.0 0.0 3.9617370355092056 0.0 5 0.0 0.0 0.0 8.324801708389225 0.0 6 0.0 0.0 0.0 9.866686909507509 0.0 7 0.0 0.0 0.0 14.167225175967886 0.0 8 0.0 0.0 0.0 19.237857042261258 0.0 9 0.0 0.0 0.0 23.514823053266305 0.0 10 0.0 0.0 0.0 25.767072156072302 0.0 11 0.0 0.0 0.0 27.660943070006603 0.0 12 0.0 0.0 0.0 28.97849231454578 0.0 13 0.0 0.0 0.0 29.567698818490637 0.0 14 0.0 0.0 0.0 30.008180371702505 0.0 15 0.0 0.0 0.0 31.26510097615107 0.0 16 0.0 0.0 0.0 32.71469480421544 0.0 17 0.0 0.0 0.0 34.328994773152 0.0 18 0.0 0.0 0.0 35.265092985556 0.0 19 0.0 0.0 0.0 36.28669056520475 0.0 20 0.0 0.0 0.0 37.374709966369586 0.0 21 0.0 0.0 0.0 38.471818669426085 0.0 22 9.988243837003846E-5 0.0 0.0 39.51628932746158 0.0 23 9.988243837003846E-5 0.0 0.0 40.373979825745096 0.0 24 4.994121918501923E-4 0.0 0.0 41.123098113520385 0.0 25 4.994121918501923E-4 0.0 0.0 41.80799199342374 0.0 26 4.994121918501923E-4 0.0 0.0 42.530241905277485 0.0 27 4.994121918501923E-4 0.0 0.0 43.2189313178389 0.0 28 4.994121918501923E-4 0.0 0.0 43.90831990746891 0.0 29 4.994121918501923E-4 0.0 0.0 44.7274557845416 0.0 30 4.994121918501923E-4 0.0 0.0 45.432326152118954 0.0 31 4.994121918501923E-4 0.0 0.0 46.05788986363051 0.0 32 4.994121918501923E-4 0.0 0.0 46.6826545156351 0.0 33 4.994121918501923E-4 0.0 0.0 47.293635391144626 0.0 34 5.992946302202308E-4 0.0 0.0 47.95086183561948 0.0 35 5.992946302202308E-4 0.0 0.0 48.548158817072306 0.0 36 5.992946302202308E-4 0.0 0.0 49.09281775350413 0.0 37 5.992946302202308E-4 0.0 0.0 49.66084918051453 0.0 38 5.992946302202308E-4 0.0 0.0 50.210502238864855 0.0 39 5.992946302202308E-4 0.0 0.0 50.76235271085932 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 130 0.0 45.000004 24 TTCGATT 85 0.0 45.000004 39 TAGTCGG 30 2.1652195E-6 45.000004 1 TACACGG 60 0.0 45.000004 1 TCGCAGT 25 3.8904447E-5 45.0 40 CATGCGG 145 0.0 45.0 1 AACTTCG 110 0.0 45.0 10 CGCGCAG 50 2.1827873E-11 45.0 34 GTTAGTA 20 7.03285E-4 45.0 29 CTAAGCA 25 3.8904447E-5 45.0 18 TACGGAA 20 7.03285E-4 45.0 3 AGACGGT 25 3.8904447E-5 45.0 2 CCATCGA 25 3.8904447E-5 45.0 40 ACATACG 40 6.8139343E-9 45.0 16 GCCGTGG 20 7.03285E-4 45.0 13 GCCCGAC 20 7.03285E-4 45.0 8 ATCGATC 25 3.8904447E-5 45.0 42 GTACGAC 20 7.03285E-4 45.0 8 ACGGTAG 20 7.03285E-4 45.0 4 CGTTTTT 14670 0.0 44.616566 1 >>END_MODULE