SRR1043358_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043358_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1287534
Sequences flagged as poor quality	0
Sequence length	52
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	53631	4.165404564073648	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	8215	0.6380414031784792	No Hit
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	5777	0.4486871802997047	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCTT	4875	0.37863077790567085	Illumina Single End Adapter 2 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	4191	0.3255059672210598	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	3907	0.3034482972876833	No Hit
CGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	2157	0.1675295565010322	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCG	1832	0.14228750464065415	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1774	0.13778276923172514	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1453	0.11285138877885945	No Hit
TCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	1406	0.10920099974058936	No Hit
GCCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1314	0.10205555736780543	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	35	1.0197073E-7	46.000004	10
CGCATTA	20	6.311738E-4	46.0	36
ATTACGT	25	3.417387E-5	46.0	11
CCGGTTA	20	6.311738E-4	46.0	26
CCAACGA	20	6.311738E-4	46.0	45
GTACGAT	20	6.311738E-4	46.0	26
AAGTCCG	20	6.311738E-4	46.0	10
CGTTTTT	12775	0.0	45.22583	1
CACGACG	345	0.0	44.666668	25
CGGTCTA	355	0.0	44.05634	30
TCACGAC	370	0.0	43.51351	24
TACGGGA	185	0.0	43.51351	3
ATTGCGG	180	0.0	43.444447	1
AATGCGG	160	0.0	43.125	1
GCGATAT	70	0.0	42.714287	8
CTTGCGG	345	0.0	42.666668	1
ACCCGCA	1930	0.0	42.663208	31
CACTTAC	1890	0.0	42.592594	36
CCGCACT	1905	0.0	42.498688	33
CGCACTT	1910	0.0	42.387432	34