##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043358_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1287534 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.35035424307242 33.0 31.0 34.0 31.0 34.0 2 32.68159520447615 34.0 31.0 34.0 31.0 34.0 3 32.82143694846117 34.0 31.0 34.0 31.0 34.0 4 36.25278555750761 37.0 37.0 37.0 35.0 37.0 5 36.18483317722095 37.0 37.0 37.0 35.0 37.0 6 36.33155551620384 37.0 37.0 37.0 35.0 37.0 7 36.2617220205447 37.0 37.0 37.0 35.0 37.0 8 36.25535636340477 37.0 37.0 37.0 35.0 37.0 9 37.78007027387238 39.0 38.0 39.0 35.0 39.0 10 37.62277734024888 39.0 37.0 39.0 35.0 39.0 11 37.33468630731305 39.0 37.0 39.0 35.0 39.0 12 37.34554349632709 39.0 37.0 39.0 35.0 39.0 13 37.343690341381276 39.0 37.0 39.0 35.0 39.0 14 38.69785885265942 40.0 38.0 41.0 35.0 41.0 15 38.760257981536796 41.0 38.0 41.0 35.0 41.0 16 38.644212114010195 40.0 38.0 41.0 34.0 41.0 17 38.63906584214475 40.0 38.0 41.0 34.0 41.0 18 38.453713843673256 40.0 37.0 41.0 34.0 41.0 19 38.22100309584057 40.0 37.0 41.0 34.0 41.0 20 37.93410193439552 40.0 35.0 41.0 34.0 41.0 21 37.87039487889252 40.0 35.0 41.0 34.0 41.0 22 37.831797063223185 40.0 35.0 41.0 34.0 41.0 23 37.81082984993018 40.0 35.0 41.0 34.0 41.0 24 37.72544259025393 40.0 35.0 41.0 34.0 41.0 25 37.600815201773315 40.0 35.0 41.0 34.0 41.0 26 37.51207269089593 39.0 35.0 41.0 34.0 41.0 27 37.53960905110079 39.0 35.0 41.0 34.0 41.0 28 37.48146301379226 39.0 35.0 41.0 33.0 41.0 29 37.42323930863185 39.0 35.0 41.0 33.0 41.0 30 37.36895336356166 39.0 35.0 41.0 33.0 41.0 31 37.28493150472143 40.0 35.0 41.0 33.0 41.0 32 37.03589963449509 39.0 35.0 41.0 33.0 41.0 33 36.75565460795598 39.0 35.0 41.0 32.0 41.0 34 36.561415853872596 39.0 35.0 41.0 31.0 41.0 35 36.397605034119486 39.0 35.0 41.0 31.0 41.0 36 36.33585831519789 39.0 35.0 41.0 31.0 41.0 37 36.28519945881041 39.0 35.0 41.0 31.0 41.0 38 36.17783918715933 39.0 35.0 41.0 31.0 41.0 39 36.12340334313502 39.0 35.0 41.0 31.0 41.0 40 36.02709520680619 39.0 35.0 41.0 31.0 41.0 41 35.97393699894527 38.0 35.0 41.0 30.0 41.0 42 35.865555395041994 38.0 35.0 41.0 30.0 41.0 43 35.753716018373105 38.0 35.0 41.0 30.0 41.0 44 35.57478637457341 38.0 35.0 40.0 29.0 41.0 45 35.45556932865462 37.0 35.0 40.0 29.0 41.0 46 35.38176001565784 37.0 35.0 40.0 29.0 41.0 47 35.278627981863 37.0 35.0 40.0 28.0 41.0 48 35.162655898795684 37.0 35.0 40.0 28.0 41.0 49 35.082834317385014 36.0 35.0 40.0 28.0 41.0 50 34.88478595516701 36.0 35.0 40.0 28.0 41.0 51 34.681396374775346 36.0 35.0 39.0 27.0 41.0 52 34.29861580354383 35.0 34.0 39.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 4.0 13 1.0 14 7.0 15 28.0 16 49.0 17 115.0 18 251.0 19 495.0 20 914.0 21 1523.0 22 2386.0 23 3927.0 24 6642.0 25 11603.0 26 16482.0 27 19546.0 28 20018.0 29 19680.0 30 20802.0 31 23795.0 32 28987.0 33 37474.0 34 81010.0 35 130921.0 36 115423.0 37 119104.0 38 187950.0 39 437462.0 40 934.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.287406779160783 17.21849675426047 22.545657046726532 28.948439419852214 2 34.34084070789587 19.633034933446417 24.759035489548236 21.267088869109475 3 26.096475898888883 20.929000709884164 33.001303266554515 19.973220124672437 4 23.81405073574756 23.87338897458242 30.876621510577586 21.435938779092435 5 21.596788900331955 31.754112901096203 28.71574653562547 17.933351662946375 6 78.5749347201705 1.9194832913150255 16.632725815395943 2.872856173118535 7 78.8492575730039 2.103711435969846 14.826559919971045 4.220471071055211 8 69.7308964268128 3.5444500883083476 20.208165376603645 6.516488108275199 9 39.115005894989956 16.972833338770084 25.91558747186482 17.99657329437514 10 27.531544798040287 17.743143093696943 35.09243251052011 19.63287959774266 11 24.447432067813356 15.195326880688198 38.55051594754003 21.806725103958417 12 20.055315044107573 18.032300506239057 40.72506046442268 21.18732398523068 13 16.10559410469937 21.411162734343325 42.19515756477111 20.288085596186196 14 16.28337581764831 19.83023360936488 41.87524368288527 22.011146890101543 15 19.3747116580999 16.071342582021135 42.671649836043166 21.882295923835798 16 17.99051520192865 19.87396060997224 37.92847412184843 24.207050066250677 17 19.23071546071793 19.935551216511563 37.46899111013767 23.36474221263283 18 20.702909593067055 24.97363176428739 34.27202699113188 20.051431651513667 19 22.14729863444383 21.022668139249138 33.429020126847135 23.401013099459895 20 20.43130511504939 25.11778329737312 35.16885767676815 19.282053910809346 21 19.438787635899324 19.9024647116115 35.75439561207704 24.904352040412135 22 19.458126931016967 21.57333320906477 32.7305531349075 26.23798672501076 23 19.762973249638456 20.20568000534355 38.59781566933378 21.433531075684215 24 23.49631155371431 18.62063448421556 34.024421879344544 23.858632082725585 25 18.012417536158267 21.90404292236166 34.60390172220695 25.479637819273123 26 17.95463265436097 20.25996983380633 34.9432325670623 26.842164944770392 27 21.817520935369476 20.966048275230012 34.82766280346771 22.388767985932798 28 21.490383943258976 21.262739469404305 32.87385032162257 24.37302626571415 29 23.155039012562 19.680179319536418 34.257425434978806 22.907356232922783 30 23.955095554758167 20.28148382877656 31.079179268275638 24.68424134818964 31 27.50940946025503 19.501931599476208 30.1233986830639 22.86526025720486 32 24.700862268491548 20.20327230193533 30.673908417175777 24.421957012397343 33 20.770635959904748 21.05831768326118 32.30982638128391 25.86121997555016 34 21.7401637548989 20.440858260830392 34.69438476964492 23.12459321462579 35 23.152320637746264 24.033928424414423 30.204173249017114 22.6095776888222 36 21.900392533323394 23.91641696452288 31.072810504421632 23.1103799977321 37 21.335669582317827 25.34729179967286 32.43525996206702 20.88177865594229 38 19.705654374952427 24.902022004855795 29.911054776029218 25.481268844162564 39 22.614781434898028 22.426669897649305 33.16821148024052 21.790337187212145 40 18.72300071299088 21.49784005703927 34.99767773122884 24.781481498741005 41 21.19268306701027 24.74552128332145 28.681883352206622 25.379912297461658 42 20.494915085737542 19.852368947150133 32.554169443292366 27.098546523819955 43 22.97112153931469 19.862931775005556 32.882704456736676 24.28324222894308 44 21.63142876226958 20.958669829301595 33.228559401149795 24.18134200727903 45 22.018525336029963 21.19322674197342 32.21848898747528 24.569758934521342 46 22.247257159810925 21.924624903109354 31.877837789138 23.950280147941726 47 19.241433624277107 22.734545262494038 34.76413050063144 23.259890612597413 48 21.393609799818876 20.764733203162013 31.126323654365635 26.715333342653473 49 21.117578254244158 19.029633392205564 34.890962102748354 24.96182625080192 50 19.90774612553921 19.455020216941843 35.73692034540447 24.900313312114474 51 19.230171785754784 18.10290058359624 34.40157696806453 28.265350662584442 52 18.023291035421202 19.35692572001982 38.197049553642856 24.422733690916125 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 473.0 1 2443.0 2 4413.0 3 36179.0 4 67945.0 5 38537.0 6 9129.0 7 8473.0 8 7817.0 9 7714.0 10 7611.0 11 7634.5 12 7658.0 13 7301.0 14 6596.0 15 6248.0 16 5889.5 17 5531.0 18 5226.0 19 4921.0 20 4828.0 21 4735.0 22 4577.5 23 4420.0 24 4601.0 25 4782.0 26 5508.5 27 6235.0 28 6953.5 29 7672.0 30 8915.5 31 10159.0 32 11415.5 33 12672.0 34 14689.5 35 16707.0 36 18413.5 37 20120.0 38 22329.5 39 26545.0 40 28551.0 41 33785.5 42 39020.0 43 47298.5 44 55577.0 45 67509.0 46 79441.0 47 95496.5 48 111552.0 49 121063.5 50 130575.0 51 120708.5 52 110842.0 53 97468.5 54 84095.0 55 76641.5 56 69188.0 57 64994.0 58 60800.0 59 58639.0 60 56478.0 61 54162.0 62 51846.0 63 50981.0 64 43397.5 65 36679.0 66 30310.0 67 23941.0 68 20008.5 69 16076.0 70 14145.5 71 12215.0 72 12724.5 73 13234.0 74 10629.0 75 8024.0 76 6041.0 77 4058.0 78 3084.5 79 2111.0 80 1633.0 81 1155.0 82 917.5 83 680.0 84 509.5 85 339.0 86 224.0 87 109.0 88 83.0 89 42.0 90 27.0 91 16.0 92 5.0 93 3.5 94 2.0 95 5.5 96 9.0 97 5.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1287534.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.136888293947464 #Duplication Level Percentage of deduplicated Percentage of total 1 74.58063887523205 21.73047743798872 2 10.655393519427793 6.209300214072387 3 3.9421068267801083 3.4458217876409925 4 1.8319475086278747 2.13508999677063 5 1.0753862103939757 1.566670394255038 6 0.7240922584779028 1.2658677149869675 7 0.5191060274677467 1.0587594034529793 8 0.4362210333436028 1.0168098816002311 9 0.35585584527159664 0.9331678811184088 >10 5.226207538922653 36.388272363051584 >50 0.5392865045382298 10.010253685618423 >100 0.10248938509736752 5.3763717759605045 >500 0.006707420487585287 1.3580273423030003 >1k 0.0037561554730477613 2.2187940396376957 >5k 5.36593639006823E-4 1.0938014375721608 >10k+ 2.682968195034115E-4 4.192514643970308 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 53631 4.165404564073648 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 8215 0.6380414031784792 No Hit CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT 5777 0.4486871802997047 No Hit CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCTT 4875 0.37863077790567085 Illumina Single End Adapter 2 (95% over 21bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 4191 0.3255059672210598 No Hit GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT 3907 0.3034482972876833 No Hit CGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC 2157 0.1675295565010322 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCG 1832 0.14228750464065415 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 1774 0.13778276923172514 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 1453 0.11285138877885945 No Hit TCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT 1406 0.10920099974058936 No Hit GCCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC 1314 0.10205555736780543 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3912129699099208 0.0 2 0.0 0.0 0.0 1.3410907983789166 0.0 3 0.0 0.0 0.0 2.1108568783426302 0.0 4 0.0 0.0 0.0 2.6054457591022837 0.0 5 0.0 0.0 0.0 5.19295024442073 0.0 6 0.0 0.0 0.0 5.750294749497877 0.0 7 0.0 0.0 0.0 7.641584610581157 0.0 8 0.0 0.0 0.0 9.854730049847227 0.0 9 0.0 0.0 0.0 11.598373324510264 0.0 10 0.0 0.0 0.0 12.843233654412233 0.0 11 0.0 0.0 0.0 13.985727755538884 0.0 12 0.0 0.0 0.0 14.849471936275082 0.0 13 0.0 0.0 0.0 15.256839819375644 0.0 14 7.766785187808633E-5 0.0 0.0 15.534813061247315 0.0 15 7.766785187808633E-5 0.0 0.0 16.44896367785239 0.0 16 7.766785187808633E-5 0.0 0.0 17.42439422958928 0.0 17 1.5533570375617266E-4 0.0 0.0 18.568752359161 0.0 18 1.5533570375617266E-4 0.0 0.0 19.224113693308293 0.0 19 1.5533570375617266E-4 0.0 0.0 19.88778548760654 0.0 20 1.5533570375617266E-4 0.0 0.0 20.669357081055722 0.0 21 1.5533570375617266E-4 0.0 0.0 21.401609588562323 0.0 22 2.3300355563425897E-4 0.0 0.0 22.119415875619595 0.0 23 2.3300355563425897E-4 0.0 0.0 22.7970678832559 0.0 24 4.6600711126851794E-4 0.0 0.0 23.30641365587239 0.0 25 9.320142225370359E-4 0.0 0.0 23.804031582855288 0.0 26 9.320142225370359E-4 0.0 0.0 24.270116361975685 0.0 27 9.320142225370359E-4 0.0 0.0 24.793675351485863 0.0 28 9.320142225370359E-4 0.0 0.0 25.328496179518368 0.0 29 9.320142225370359E-4 0.0 0.0 25.86479269673655 0.0 30 9.320142225370359E-4 0.0 0.0 26.3668376912765 0.0 31 9.320142225370359E-4 0.0 0.0 26.848067701513123 0.0 32 9.320142225370359E-4 0.0 0.0 27.377684783469796 0.0 33 9.320142225370359E-4 0.0 0.0 27.86264285059657 0.0 34 9.320142225370359E-4 0.0 0.0 28.39987138203729 0.0 35 9.320142225370359E-4 0.0 0.0 28.854927326190996 0.0 36 9.320142225370359E-4 0.0 0.0 29.32613818353535 0.0 37 9.320142225370359E-4 0.0 0.0 29.867250107569976 0.0 38 9.320142225370359E-4 0.0 0.0 30.425448959017782 0.0 39 9.320142225370359E-4 0.0 0.0 31.053626545007745 0.0 40 9.320142225370359E-4 0.0 0.0 31.655940736322304 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTAGCG 35 1.0197073E-7 46.000004 10 CGCATTA 20 6.311738E-4 46.0 36 ATTACGT 25 3.417387E-5 46.0 11 CCGGTTA 20 6.311738E-4 46.0 26 CCAACGA 20 6.311738E-4 46.0 45 GTACGAT 20 6.311738E-4 46.0 26 AAGTCCG 20 6.311738E-4 46.0 10 CGTTTTT 12775 0.0 45.22583 1 CACGACG 345 0.0 44.666668 25 CGGTCTA 355 0.0 44.05634 30 TCACGAC 370 0.0 43.51351 24 TACGGGA 185 0.0 43.51351 3 ATTGCGG 180 0.0 43.444447 1 AATGCGG 160 0.0 43.125 1 GCGATAT 70 0.0 42.714287 8 CTTGCGG 345 0.0 42.666668 1 ACCCGCA 1930 0.0 42.663208 31 CACTTAC 1890 0.0 42.592594 36 CCGCACT 1905 0.0 42.498688 33 CGCACTT 1910 0.0 42.387432 34 >>END_MODULE