SRR1043357_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043357_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1260208
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	50692	4.022510569683735	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7997	0.634577783984866	No Hit
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	5579	0.44270469636758375	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	4671	0.37065309853611467	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	3660	0.2904282467656133	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	3476	0.275827482447342	No Hit
CGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTG	2093	0.1660836941203357	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCC	1770	0.14045300458337034	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	1577	0.12513807244518366	No Hit
TCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1459	0.1157745388062923	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	1380	0.10950573238703452	No Hit
GCCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTG	1358	0.10775998882724122	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAACGG	60	0.0	45.000004	1
AATCGAG	35	1.2120472E-7	45.000004	30
CGGAATA	25	3.8910206E-5	45.0	5
CCCGTTA	25	3.8910206E-5	45.0	42
GCCGATT	25	3.8910206E-5	45.0	8
CGCTAAT	20	7.033547E-4	45.0	33
CTTGACG	20	7.033547E-4	45.0	11
ACGTCGA	20	7.033547E-4	45.0	29
TATACGG	50	2.1827873E-11	45.0	1
CGTTTAG	20	7.033547E-4	45.0	28
GCGTAGG	165	0.0	45.0	1
CGTTTTT	12110	0.0	44.163914	1
CGGTCTA	290	0.0	43.448273	30
CGACGGT	300	0.0	42.750004	27
TACGAAA	180	0.0	42.5	19
CGTAGGG	525	0.0	42.428574	2
CACGACG	320	0.0	42.1875	25
CTCACGT	245	0.0	41.32653	44
GTAGGGT	540	0.0	41.25	3
GCACCGA	290	0.0	41.12069	8