SRR1043355_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043355_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2878763
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	97221	3.3771797122583553	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	17051	0.5923030134818323	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	11331	0.3936065594840562	No Hit
CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	10442	0.3627252399728634	No Hit
CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT	8780	0.3049921094581249	No Hit
GCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	6304	0.21898294510524136	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5116	0.1777152200441648	No Hit
CGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTG	4852	0.16854461447503669	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3794	0.13179271791390954	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCC	3239	0.1125136039333561	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3086	0.10719882116033866	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATTCG	45	3.8562575E-10	45.0	26
CGTTTTT	26470	0.0	44.430485	1
TATACGG	175	0.0	43.714287	1
GTTACGG	205	0.0	42.80488	1
AGGGTAC	1050	0.0	42.428574	5
CATACCA	85	0.0	42.35294	18
GTACCGG	75	0.0	42.0	1
TACCGGT	145	0.0	41.896553	40
CGCACTT	4370	0.0	41.39588	34
GCACTTA	4370	0.0	41.292908	35
CCGCACT	4385	0.0	41.202965	33
AATGCGG	400	0.0	41.0625	1
CACTTAC	4390	0.0	41.053528	36
CCCGCAC	4460	0.0	40.913677	32
ACTTACT	4385	0.0	40.895096	37
ACCCGCA	4465	0.0	40.81747	31
TAGCATA	1970	0.0	40.54569	29
ACGGGAT	390	0.0	40.384617	4
CTTACTG	4435	0.0	40.33258	38
ACGTAGG	190	0.0	40.263157	1