SRR1043354_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043354_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2418239
Sequences flagged as poor quality	0
Sequence length	52
%GC	46

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	126136	5.216027034548695	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	19977	0.826097006954234	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	14561	0.6021323781479002	No Hit
CCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGCT	9792	0.40492275577393305	No Hit
CTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGCTT	6985	0.28884655321496344	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGC	6777	0.28024525284721646	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCT	5883	0.24327620222815033	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	5717	0.23641170289619845	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTC	4981	0.20597633236417076	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4759	0.1967960983178255	No Hit
GCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGCT	4070	0.16830429084966372	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3419	0.14138387479484038	No Hit
GGGCCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCT	3401	0.14063953149378536	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCG	3160	0.13067360174077086	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTT	3105	0.12839921943199165	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2780	0.11495968760738702	No Hit
CGTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTG	2756	0.113967229872647	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA	2532	0.10470429101507336	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	31825	0.0	45.31343	1
CACTTAC	5245	0.0	42.141087	36
CGGTCTA	595	0.0	42.134453	30
CTTACTG	5185	0.0	41.963356	38
TCACGAC	620	0.0	41.919353	24
CGACGGT	600	0.0	41.783333	27
ACGGGTA	215	0.0	41.72093	4
ACTTACT	5265	0.0	41.63153	37
GCACTTA	5305	0.0	41.577755	35
TCGGCGT	2165	0.0	41.53811	4
ACCCGCA	5405	0.0	41.531914	31
CCGCACT	5330	0.0	41.46904	33
CACGACG	605	0.0	41.43802	25
ACTACGG	100	0.0	41.399998	1
CGCACTT	5335	0.0	41.343956	34
TACGGGA	390	0.0	41.28205	3
CCCGCAC	5490	0.0	40.930786	32
TCGACGT	45	1.5896148E-8	40.88889	25
GTTTTTT	35905	0.0	40.67679	2
TTACTGG	5235	0.0	40.508118	39

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content