SRR1043353_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043353_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2378453
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	120534	5.067747817594041	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	19288	0.810947283801698	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	12150	0.5108362452400783	No Hit
CCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGC	9269	0.3897070911218342	No Hit
CTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGCT	6707	0.2819900161996054	No Hit
CGCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTG	6706	0.2819479720641947	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTC	5637	0.23700279131014992	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5388	0.2265338015928841	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTT	4732	0.19895284876346098	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4664	0.19609384755553297	No Hit
GCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGC	4100	0.17238095518389474	No Hit
GGGCCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTC	3569	0.15005551928080985	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3204	0.13470940985590213	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCT	3140	0.13201858518961695	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCC	3033	0.12751986270067142	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2687	0.11297259184856713	No Hit
CGTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCT	2660	0.11183740019247805	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	2475	0.10405923514149742	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAACGG	95	0.0	45.0	1
TATAACG	20	7.034811E-4	45.0	21
CGTTTTT	30170	0.0	44.366093	1
TCTACGG	150	0.0	42.0	1
CGGTCTA	595	0.0	41.97479	30
ACGGGAT	510	0.0	41.911766	4
ACGGGTA	200	0.0	41.625004	4
ATGACGG	195	0.0	41.53846	1
TCACGAC	625	0.0	41.399998	24
CGACGGT	605	0.0	41.280994	27
CACGACG	605	0.0	41.280994	25
AATACGG	120	0.0	41.250004	1
TCGGCGT	1820	0.0	40.92033	4
CACTTAC	4975	0.0	40.79397	36
ACTTACT	4930	0.0	40.709938	37
TGTACGG	260	0.0	40.673077	1
CTTACTG	4925	0.0	40.614216	38
ATTGCGG	550	0.0	40.5	1
CGCACTT	5065	0.0	40.380062	34
GCACTTA	5060	0.0	40.28656	35