##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043353_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2378453 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.31689337565216 33.0 31.0 34.0 31.0 34.0 2 32.61111697393221 34.0 31.0 34.0 31.0 34.0 3 32.706991056791956 34.0 31.0 34.0 31.0 34.0 4 36.18429416095252 37.0 37.0 37.0 35.0 37.0 5 36.1808726092128 37.0 37.0 37.0 35.0 37.0 6 36.32822258837992 37.0 37.0 37.0 35.0 37.0 7 36.28320551215433 37.0 37.0 37.0 35.0 37.0 8 36.194642063559805 37.0 37.0 37.0 35.0 37.0 9 37.79531233116652 39.0 38.0 39.0 35.0 39.0 10 37.60558943144977 39.0 37.0 39.0 35.0 39.0 11 37.36242339032977 39.0 37.0 39.0 35.0 39.0 12 37.385166324497476 39.0 37.0 39.0 35.0 39.0 13 37.387239941255935 39.0 37.0 39.0 35.0 39.0 14 38.732526982875 40.0 38.0 41.0 35.0 41.0 15 38.78986172945187 41.0 38.0 41.0 35.0 41.0 16 38.68081816205744 41.0 38.0 41.0 34.0 41.0 17 38.64439995240604 40.0 38.0 41.0 34.0 41.0 18 38.442865173287004 40.0 38.0 41.0 34.0 41.0 19 38.19590254673941 40.0 37.0 41.0 34.0 41.0 20 37.902851979837315 40.0 35.0 41.0 34.0 41.0 21 37.842990801163616 40.0 35.0 41.0 34.0 41.0 22 37.80971497019281 40.0 35.0 41.0 34.0 41.0 23 37.790472630739394 40.0 35.0 41.0 34.0 41.0 24 37.70520922633325 40.0 35.0 41.0 34.0 41.0 25 37.670109100326975 39.0 35.0 41.0 34.0 41.0 26 37.637315515589336 39.0 35.0 41.0 34.0 41.0 27 37.61037909935576 39.0 35.0 41.0 34.0 41.0 28 37.51948682610083 39.0 35.0 41.0 34.0 41.0 29 37.466588997133854 39.0 35.0 41.0 34.0 41.0 30 37.336326175038984 39.0 35.0 41.0 33.0 41.0 31 37.20821222870496 39.0 35.0 41.0 33.0 41.0 32 36.933561016341294 39.0 35.0 41.0 33.0 41.0 33 36.5292549400808 39.0 35.0 41.0 31.0 41.0 34 36.23354382028991 39.0 35.0 41.0 31.0 41.0 35 36.05254718087765 39.0 35.0 41.0 30.0 41.0 36 35.976093704605475 39.0 35.0 41.0 30.0 41.0 37 35.851312176444104 39.0 35.0 41.0 30.0 41.0 38 35.72102412786799 38.0 35.0 41.0 29.0 41.0 39 35.643119708482786 38.0 35.0 41.0 29.0 41.0 40 35.51590887017738 38.0 35.0 41.0 28.0 41.0 41 35.425998327484294 38.0 35.0 41.0 28.0 41.0 42 35.299623326590854 38.0 35.0 40.0 27.0 41.0 43 35.171931503376356 37.0 35.0 40.0 27.0 41.0 44 35.03732215856273 37.0 35.0 40.0 26.0 41.0 45 34.96691042454906 37.0 35.0 40.0 26.0 41.0 46 34.86734150306943 37.0 35.0 40.0 25.0 41.0 47 34.708223370400844 36.0 35.0 40.0 24.0 41.0 48 34.63135155498133 36.0 35.0 40.0 24.0 41.0 49 34.544618287601224 36.0 34.0 40.0 25.0 41.0 50 34.44168457396467 36.0 34.0 40.0 24.0 41.0 51 33.98698229479414 35.0 34.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 2.0 12 3.0 13 8.0 14 21.0 15 25.0 16 86.0 17 223.0 18 470.0 19 923.0 20 1670.0 21 2666.0 22 4178.0 23 6504.0 24 11077.0 25 19782.0 26 32559.0 27 42125.0 28 45269.0 29 44418.0 30 44754.0 31 48887.0 32 55686.0 33 71057.0 34 156113.0 35 221336.0 36 220947.0 37 217802.0 38 354287.0 39 775364.0 40 207.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.82362905636563 16.724274139535236 21.63444053760995 31.817656266489188 2 37.0679176759011 19.179525515114236 22.352133929070703 21.40042287991396 3 25.84389937492984 20.390606835619625 34.256089987903906 19.509403801546636 4 22.509084686558868 22.847539976615053 32.55384907753064 22.089526259295432 5 20.93469999196957 31.22378285381296 29.449730560158223 18.391786594059248 6 76.66045955080887 1.9320541545281744 18.431476257886953 2.9760100367760054 7 76.27163538653066 1.8185770330546789 17.09968622461743 4.810101355797235 8 67.15461688753152 3.384006326801497 22.201195482946268 7.260181302720718 9 38.549679140180615 17.654458591361696 26.502857109221832 17.293005159235854 10 26.66859509101084 15.903026042557913 37.20792464681875 20.220454219612495 11 24.20892908121371 12.73760717575668 41.053323315617334 22.00014042741227 12 20.561011716439214 13.90315469761227 43.144556566810444 22.39127701913807 13 16.510059269617688 17.54556428064797 44.05094403799444 21.893432411739898 14 17.198994472457517 17.911474391127342 43.01363112914151 21.875900007273636 15 20.522835641486296 14.280837166006643 43.43024646692619 21.76608072558087 16 18.899805882226808 18.635011917410182 40.334620864906725 22.13056133545628 17 19.606988239834884 20.294704162747802 39.135690299535035 20.96261729788228 18 20.166932035234666 26.045458960088762 35.5359134698058 18.251695534870777 19 21.29215923123139 21.19608838181793 34.60131438376121 22.91043800318947 20 20.937390816635855 25.339748147220064 35.03121566833568 18.691645367808405 21 18.20792758990823 20.032264669514177 36.33517248396332 25.42463525661428 22 19.530257692710347 22.29196877129798 34.3299194896851 23.84785404630657 23 20.54474063603527 20.290331572665092 37.21868794548389 21.946239845815747 24 23.156942769102436 18.551638396890752 34.38941194129125 23.902006892715562 25 17.991904822168024 19.141811925650835 37.20632696967314 25.659956282508002 26 18.02373223267393 18.270489263399362 37.254593637124636 26.451184866802073 27 21.55039431092395 20.857591047626336 36.21778525789662 21.374229383553093 28 22.614783642981383 22.0862468167334 32.38285557881531 22.916113961469915 29 23.450158569456704 18.874369180303333 35.18101892280402 22.49445332743594 30 25.18847334801234 21.348330196140097 30.630792367980362 22.832404087867197 31 26.3955184315183 20.082633543736204 29.11943183237171 24.40241619237378 32 25.039763241064676 23.214711411156745 28.148422525061456 23.59710282271712 33 20.47192019350393 23.315070762382103 31.22714638464582 24.98586265946815 34 19.27618498242345 27.673576059732945 29.198516851079255 23.851722106764356 35 20.390606835619625 28.91614843766095 27.707169323926102 22.98607540279333 36 20.643123912896325 29.375522661158328 26.096458496341953 23.8848949296034 37 19.46963004944811 31.2580908683081 27.87475724767317 21.39752183457062 38 18.377827941102893 29.0424069762993 26.77193957585035 25.80782550674745 39 20.73763912929959 25.789788572656256 31.909018172736648 21.563554125307498 40 17.710251159051705 24.539732338625146 34.46572204706168 23.284294455261467 41 19.869595909610155 26.14073097092942 29.52873149059494 24.460941628865484 42 18.9908734795264 21.041786404860638 32.109526654510304 27.85781346110266 43 21.891960867000527 21.046327171484993 33.251066975046385 23.810644986468095 44 22.214018944246533 21.70108049223592 32.98908996730228 23.095810596215273 45 22.200480732644287 22.45245123616065 31.94824535107484 23.39882268012023 46 22.040082356052444 21.912226140268483 31.327842088954462 24.719849414724614 47 19.379823776210838 23.237078891195242 33.541171509380256 23.84192582321366 48 21.132643781483175 21.158080483406653 30.502095269488194 27.20718046562198 49 20.21107837741591 18.527210754217133 35.082971999026256 26.1787388693407 50 19.454115763481557 18.788220746846797 36.751493512800124 25.006169976871522 51 18.502741067408103 17.99955685481277 35.01784563327507 28.479856444504055 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 642.0 1 3657.0 2 6672.0 3 83576.5 4 160481.0 5 91906.0 6 23331.0 7 20894.0 8 18457.0 9 17709.0 10 16961.0 11 16417.5 12 15874.0 13 15090.5 14 14307.0 15 13483.0 16 12659.0 17 11670.5 18 10682.0 19 9939.0 20 9196.0 21 8728.0 22 8260.0 23 8083.0 24 7906.0 25 7862.5 26 9007.5 27 10196.0 28 10989.5 29 11783.0 30 13500.5 31 15218.0 32 17257.5 33 19297.0 34 23009.0 35 26721.0 36 28463.5 37 30206.0 38 33690.0 39 37174.0 40 43485.0 41 49796.0 42 61371.5 43 72947.0 44 101758.5 45 130570.0 46 169047.0 47 207524.0 48 235590.5 49 263657.0 50 238836.5 51 214016.0 52 179383.5 53 144751.0 54 132376.0 55 120001.0 56 117155.0 57 114309.0 58 111790.5 59 109272.0 60 107633.5 61 105995.0 62 102968.5 63 99942.0 64 99080.5 65 98219.0 66 79183.0 67 60147.0 68 49399.0 69 38651.0 70 33013.5 71 27376.0 72 25292.5 73 23209.0 74 19881.0 75 12505.0 76 8457.0 77 6513.5 78 4570.0 79 3562.5 80 2555.0 81 1873.5 82 1192.0 83 855.0 84 518.0 85 377.0 86 236.0 87 155.5 88 75.0 89 50.0 90 25.0 91 29.5 92 34.0 93 21.0 94 8.0 95 6.5 96 5.0 97 3.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2378453.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.543178145359345 #Duplication Level Percentage of deduplicated Percentage of total 1 73.76252546372932 22.529419556902898 2 10.060574976861048 6.145638675260229 3 3.7095222995090666 3.3990180128426544 4 1.9752833696138217 2.4132572738272255 5 1.355938129897451 2.0707329927771627 6 1.0656600963411886 1.9529187698969834 7 0.8477616877312508 1.8125335377230267 8 0.7031994612369992 1.7182357133025905 9 0.6229930917217196 1.7125370085406206 >10 5.510474217476116 31.706189629536624 >50 0.23235254668661007 4.927447499550984 >100 0.1420833126187366 7.715909129102775 >500 0.006231078523242542 1.3562408168784885 >1k 0.004292520760455973 2.687063748920256 >5k 6.923420581380601E-4 1.4255584761919424 >10k+ 4.154052348828361E-4 6.427299158745717 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 120534 5.067747817594041 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 19288 0.810947283801698 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 12150 0.5108362452400783 No Hit CCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGC 9269 0.3897070911218342 No Hit CTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGCT 6707 0.2819900161996054 No Hit CGCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTG 6706 0.2819479720641947 No Hit CGTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTC 5637 0.23700279131014992 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5388 0.2265338015928841 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTT 4732 0.19895284876346098 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4664 0.19609384755553297 No Hit GCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGC 4100 0.17238095518389474 No Hit GGGCCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTC 3569 0.15005551928080985 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3204 0.13470940985590213 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCT 3140 0.13201858518961695 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCC 3033 0.12751986270067142 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2687 0.11297259184856713 No Hit CGTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCT 2660 0.11183740019247805 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 2475 0.10405923514149742 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2925010500522819 0.0 2 0.0 0.0 0.0 0.9864815491413957 0.0 3 0.0 0.0 0.0 1.6861800506463656 0.0 4 0.0 0.0 0.0 2.1451338327896328 0.0 5 0.0 0.0 0.0 4.477448156427728 0.0 6 0.0 0.0 0.0 5.499793353074456 0.0 7 0.0 0.0 0.0 8.168124406914915 0.0 8 0.0 0.0 0.0 11.209344897712926 0.0 9 0.0 0.0 0.0 14.250102903021418 0.0 10 0.0 0.0 0.0 15.921357285596983 0.0 11 0.0 0.0 0.0 17.194537794103983 0.0 12 0.0 0.0 0.0 18.08225766916563 0.0 13 0.0 0.0 0.0 18.56580727052416 0.0 14 0.0 0.0 0.0 18.868062559991724 0.0 15 4.204413541070604E-5 0.0 0.0 19.568854209017374 0.0 16 4.204413541070604E-5 0.0 0.0 20.31538987736987 0.0 17 4.204413541070604E-5 0.0 0.0 21.309985944645533 0.0 18 4.204413541070604E-5 0.0 0.0 21.86353903146289 0.0 19 4.204413541070604E-5 0.0 0.0 22.465358785731734 0.0 20 4.204413541070604E-5 0.0 0.0 23.123391549044694 0.0 21 4.204413541070604E-5 0.0 0.0 23.817834533623326 0.0 22 1.6817654164282415E-4 0.0 0.0 24.481879608300016 0.0 23 1.6817654164282415E-4 0.0 0.0 25.08163919993374 0.0 24 2.522648124642362E-4 0.0 0.0 25.555602738418628 0.0 25 2.522648124642362E-4 0.0 0.0 26.020022258165287 0.0 26 2.522648124642362E-4 0.0 0.0 26.47763062797541 0.0 27 2.522648124642362E-4 0.0 0.0 26.998473377443236 0.0 28 2.522648124642362E-4 0.0 0.0 27.484251317978536 0.0 29 2.522648124642362E-4 0.0 0.0 27.980372115824867 0.0 30 2.522648124642362E-4 0.0 0.0 28.44445528248824 0.0 31 2.522648124642362E-4 0.0 0.0 28.920100586389555 0.0 32 2.522648124642362E-4 0.0 0.0 29.466716390864146 0.0 33 2.522648124642362E-4 0.0 0.0 29.954386317492926 0.0 34 2.522648124642362E-4 0.0 0.0 30.5256820294536 0.0 35 2.522648124642362E-4 0.0 0.0 31.004648820052363 0.0 36 2.9430894787494223E-4 0.0 0.0 31.504049060460726 0.0 37 2.9430894787494223E-4 0.0 0.0 32.14438124276578 0.0 38 2.9430894787494223E-4 0.0 0.0 32.7653310786465 0.0 39 2.9430894787494223E-4 0.0 0.0 33.47331227482738 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAACGG 95 0.0 45.0 1 TATAACG 20 7.034811E-4 45.0 21 CGTTTTT 30170 0.0 44.366093 1 TCTACGG 150 0.0 42.0 1 CGGTCTA 595 0.0 41.97479 30 ACGGGAT 510 0.0 41.911766 4 ACGGGTA 200 0.0 41.625004 4 ATGACGG 195 0.0 41.53846 1 TCACGAC 625 0.0 41.399998 24 CGACGGT 605 0.0 41.280994 27 CACGACG 605 0.0 41.280994 25 AATACGG 120 0.0 41.250004 1 TCGGCGT 1820 0.0 40.92033 4 CACTTAC 4975 0.0 40.79397 36 ACTTACT 4930 0.0 40.709938 37 TGTACGG 260 0.0 40.673077 1 CTTACTG 4925 0.0 40.614216 38 ATTGCGG 550 0.0 40.5 1 CGCACTT 5065 0.0 40.380062 34 GCACTTA 5060 0.0 40.28656 35 >>END_MODULE