SRR1043352_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043352_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2720378
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	83806	3.0806748179848538	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	19402	0.7132097083567064	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	14471	0.5319481336784815	No Hit
CCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT	10172	0.3739186245440891	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCTT	8510	0.3128241736993903	Illumina Single End Adapter 2 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT	7459	0.2741898368535549	Illumina Single End Adapter 2 (95% over 21bp)
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	5519	0.2028762179373602	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	5417	0.19912673900465303	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4160	0.15291992509864438	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4078	0.14990563811352686	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA	3668	0.13483420318793932	No Hit
CGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	3568	0.13115824344999114	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG	3412	0.125423746258792	No Hit
TCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT	2983	0.10965387898299428	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAAGA	20	6.3129835E-4	46.0	31
CGTTTTT	23150	0.0	45.215122	1
TCACGAC	740	0.0	44.445942	24
TACGGGA	375	0.0	44.16	3
CGAATAT	120	0.0	44.083332	14
CGGTCTA	710	0.0	43.732395	30
ATAACGG	100	0.0	43.7	1
TATACGG	170	0.0	43.294117	1
TCCGTAC	165	0.0	43.21212	46
CTAACGG	225	0.0	42.933334	1
CGACGGT	725	0.0	42.193104	27
TACGCGG	235	0.0	42.085106	1
CATGCGG	280	0.0	41.892857	1
AGTAAGG	385	0.0	41.81818	1
TAGGGTA	1290	0.0	41.186043	4
TCGGCGT	2125	0.0	41.02118	4
GCGATAT	90	0.0	40.88889	8
AGGGTAC	885	0.0	40.802258	5
CGCACTT	5870	0.0	40.788757	34
TCCCCCA	2145	0.0	40.745922	10