##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043349_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1125303 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.169431699728875 33.0 31.0 34.0 30.0 34.0 2 32.477774430531156 34.0 31.0 34.0 31.0 34.0 3 32.547111311353476 34.0 31.0 34.0 31.0 34.0 4 36.117897135260456 37.0 35.0 37.0 35.0 37.0 5 36.06032775172554 37.0 35.0 37.0 35.0 37.0 6 36.29485391934439 37.0 37.0 37.0 35.0 37.0 7 36.222190823271596 37.0 37.0 37.0 35.0 37.0 8 36.12270917255175 37.0 37.0 37.0 35.0 37.0 9 37.69533894426657 39.0 38.0 39.0 35.0 39.0 10 37.547562745322814 39.0 37.0 39.0 35.0 39.0 11 37.30929003121826 39.0 37.0 39.0 34.0 39.0 12 37.33811426789052 39.0 37.0 39.0 34.0 39.0 13 37.3426419373271 39.0 37.0 39.0 34.0 39.0 14 38.75587286268676 40.0 38.0 41.0 35.0 41.0 15 38.86950536877623 41.0 38.0 41.0 35.0 41.0 16 38.91717430771979 41.0 38.0 41.0 35.0 41.0 17 38.87168522611243 41.0 38.0 41.0 35.0 41.0 18 38.623931510002194 40.0 38.0 41.0 35.0 41.0 19 38.35402376071156 40.0 37.0 41.0 35.0 41.0 20 38.09101459784609 40.0 35.0 41.0 34.0 41.0 21 38.045722796437936 40.0 35.0 41.0 34.0 41.0 22 38.01725401958406 40.0 35.0 41.0 34.0 41.0 23 37.972429647837075 40.0 35.0 41.0 34.0 41.0 24 37.88511272075166 40.0 35.0 41.0 34.0 41.0 25 37.870477551379494 40.0 35.0 41.0 34.0 41.0 26 37.8163978946115 40.0 35.0 41.0 34.0 41.0 27 37.80428115805254 40.0 35.0 41.0 34.0 41.0 28 37.743536629689956 40.0 35.0 41.0 34.0 41.0 29 37.640295991390765 40.0 35.0 41.0 34.0 41.0 30 37.586187009187746 40.0 35.0 41.0 34.0 41.0 31 37.258437060951586 39.0 35.0 41.0 33.0 41.0 32 37.0815238206954 39.0 35.0 41.0 33.0 41.0 33 36.74583645471486 39.0 35.0 41.0 32.0 41.0 34 36.34006574229341 39.0 35.0 41.0 31.0 41.0 35 36.20952312399416 39.0 35.0 41.0 30.0 41.0 36 36.13942289321187 39.0 35.0 41.0 30.0 41.0 37 36.00821201045407 39.0 35.0 41.0 30.0 41.0 38 35.989980476369475 39.0 35.0 41.0 30.0 41.0 39 35.93756970344876 39.0 35.0 41.0 30.0 41.0 40 35.867094462558086 39.0 35.0 40.0 29.0 41.0 41 35.787430585362344 39.0 35.0 40.0 29.0 41.0 42 35.754585209494685 39.0 35.0 40.0 29.0 41.0 43 35.64663472860199 39.0 35.0 40.0 28.0 41.0 44 35.58004644082527 38.0 35.0 40.0 27.0 41.0 45 35.566994844943984 38.0 35.0 40.0 27.0 41.0 46 35.494877379692404 38.0 35.0 40.0 27.0 41.0 47 35.34672972523845 38.0 35.0 40.0 26.0 41.0 48 35.314721457243074 38.0 35.0 40.0 26.0 41.0 49 35.26099726029345 38.0 35.0 40.0 26.0 41.0 50 35.16435928812062 38.0 35.0 40.0 26.0 41.0 51 34.71555838738544 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 5.0 15 12.0 16 23.0 17 79.0 18 160.0 19 341.0 20 655.0 21 1099.0 22 1743.0 23 2874.0 24 5443.0 25 10560.0 26 16491.0 27 19345.0 28 18406.0 29 17400.0 30 18722.0 31 21024.0 32 25735.0 33 33325.0 34 59483.0 35 100593.0 36 104839.0 37 87973.0 38 159364.0 39 419570.0 40 37.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.93417061893552 19.976752927878092 25.55676115677289 28.5323152964135 2 33.581355421606446 19.889754137330122 26.629183428818727 19.8997070122447 3 20.464710393556224 21.345717553405617 38.90178911813085 19.28778293490731 4 22.82087579967351 24.210368229712355 36.03393930345871 16.934816667155424 5 20.091210989395744 29.063105670206156 31.760068177193162 19.085615163204935 6 71.63270692426839 1.6488892325000466 22.504960886090235 4.2134429571413206 7 72.2715570828479 1.6183196881195554 18.387936404683895 7.7221868243486425 8 59.059826553381626 3.6429299486449427 27.363741143496462 9.933502354476973 9 32.79205689489853 17.374609327443363 30.578430875950747 19.254902901707364 10 25.576133716874477 19.31071009319268 43.16321915075317 11.94993703917967 11 22.78470776315357 15.629390484162933 41.613858667398915 19.972043085284586 12 18.171727970155594 19.11831746649569 43.882669823149854 18.827284740198863 13 12.773270843497261 22.281376660330597 43.00406201707451 21.94129047909763 14 11.967976624962343 22.225658333799874 44.22062324547255 21.58574179576523 15 12.451135383092376 17.93765767975381 48.05834517458854 21.552861762565282 16 12.962553196783444 25.00322135460405 40.06165450549763 21.972570943114878 17 14.79628153483995 22.12879553329192 41.424398584203544 21.650524347664586 18 16.342442879828813 28.77011791490825 39.484654355315854 15.402784849947082 19 15.86594899329336 23.27133225451278 37.020429164411716 23.842289587782133 20 13.032401051094682 30.17151824886275 35.331372972434984 21.46470772760759 21 13.569678566572737 24.37219131202885 37.04300086287871 25.015129258519703 22 12.257320917121877 26.943143313400924 32.70034826175706 28.099187507720142 23 11.776206052947517 23.45768206429735 43.11709823931865 21.64901364343648 24 16.97791617013373 22.070233528214178 38.4124986781338 22.53935162351829 25 13.197334406821984 25.401336351187194 38.73498959835707 22.66633964363376 26 15.346533333688795 22.601557091734403 36.9118361898973 25.140073384679507 27 21.333365324716986 23.050147382527193 38.16012220708556 17.45636508567026 28 15.92717694700894 22.356378682008312 36.45782513687424 25.258619234108505 29 17.387761340723344 26.392091729960732 34.91406314565943 21.30608378365649 30 25.48975698100867 21.076545605939025 32.22038864199243 21.213308771059882 31 20.14381904251566 23.050236247481788 36.32594954425608 20.47999516574647 32 20.726862009609857 23.898185644222046 35.896909543474074 19.478042802694027 33 25.34917262284025 20.688294619315865 35.74806074452837 18.214472013315525 34 20.025539787950443 18.15448816896427 44.45513786064731 17.364834182437974 35 26.605278756032817 18.9308124123014 38.83469607741204 15.629212754253743 36 27.05982299878344 19.17661287670965 38.23832336712867 15.525240757378237 37 24.568582861682586 18.51981199730206 42.45540978740837 14.456195353606985 38 25.145227552045984 19.112896704265427 36.01989864063279 19.7219771030558 39 30.72221437248457 18.317288765781306 35.57646251720647 15.384034344527652 40 22.74640696772336 17.283611613938646 39.82074161359207 20.14923980474592 41 23.434399446193602 21.621465507512198 32.74584711850942 22.198287927784783 42 23.477498949171913 16.663867420596944 38.8128352985818 21.045798331649344 43 25.73049214300504 19.72722013537687 36.401484755661365 18.140802965956723 44 17.834929792242622 22.25356192954253 38.29741856193399 21.61408971628086 45 21.644126070933783 20.054509763148236 36.63262250256153 21.668741663356446 46 26.247863908653933 17.35274854861313 35.895132244382175 20.504255298350753 47 20.393885024744446 15.860439366108507 39.849711588789866 23.895964020357184 48 21.073968522255786 14.877059778566307 34.27805666562695 29.770915033550967 49 22.226635848300415 14.607354641372147 40.525174108662284 22.640835401665154 50 21.073968522255786 14.32014310812288 40.714989651676035 23.8908987179453 51 18.423304656612487 14.227012635707895 38.73570051799382 28.6139821896858 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 313.0 1 1861.0 2 3409.0 3 39088.5 4 74768.0 5 42224.0 6 9680.0 7 9078.0 8 8476.0 9 8656.5 10 8837.0 11 8822.0 12 8807.0 13 8446.5 14 8086.0 15 7435.5 16 6785.0 17 6036.0 18 5287.0 19 4817.5 20 4348.0 21 4035.5 22 3723.0 23 3418.0 24 3113.0 25 3496.0 26 4538.5 27 5198.0 28 5278.0 29 5358.0 30 6319.0 31 7280.0 32 8569.0 33 9858.0 34 12648.0 35 15438.0 36 17371.5 37 19305.0 38 22491.0 39 25677.0 40 29542.5 41 33408.0 42 41648.0 43 49888.0 44 62001.0 45 74114.0 46 101304.5 47 128495.0 48 159683.5 49 190872.0 50 185158.0 51 179444.0 52 139832.5 53 100221.0 54 76130.5 55 52040.0 56 39958.5 57 27877.0 58 23760.5 59 19644.0 60 15801.5 61 11959.0 62 9686.5 63 7414.0 64 6144.0 65 4874.0 66 3742.5 67 2611.0 68 2143.0 69 1675.0 70 1429.5 71 1184.0 72 998.0 73 812.0 74 683.5 75 402.5 76 250.0 77 208.5 78 167.0 79 139.0 80 111.0 81 67.5 82 24.0 83 26.0 84 28.0 85 17.5 86 7.0 87 3.5 88 0.0 89 0.5 90 1.0 91 1.5 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1125303.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.36926226643827 #Duplication Level Percentage of deduplicated Percentage of total 1 72.09955782656881 21.896103809293002 2 12.363559030142238 7.509443334659616 3 4.919055851118985 4.481642917376705 4 2.580797236254445 3.1350763249724114 5 1.4614952252638909 2.2192265898593186 6 0.9663521964129981 1.7608441976769003 7 0.6778917340090539 1.4410950300860097 8 0.49324883943466147 1.1983682693926028 9 0.3983624929981945 1.088817752427691 >10 3.44787070044206 22.70007594189281 >50 0.3645758501835755 7.45934173598032 >100 0.21043368905356374 12.154532987970677 >500 0.010315376914252584 2.1674730539525093 >1k 0.005305050984472757 2.852729648809646 >5k 8.841751640787929E-4 2.0640938262800965 >10k+ 2.94725054692931E-4 5.871134579369626 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 65595 5.829096696623043 No Hit CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 9118 0.8102706559922084 No Hit CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT 8293 0.7369570684517859 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 5650 0.5020869934586507 No Hit CGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG 3791 0.33688704286756543 No Hit TCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 3048 0.27086038160388803 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCC 3044 0.2705049217855102 No Hit GCCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG 2151 0.19114851733266505 No Hit ACCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG 2093 0.18599434996618688 No Hit CGTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC 2041 0.1813733723272754 No Hit AGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG 1720 0.1528477219024565 No Hit TCCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG 1644 0.1460939853532782 No Hit ACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 1531 0.13605224548410516 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTC 1335 0.11863471438359269 No Hit ATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG 1318 0.117124010155487 No Hit TGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCTT 1310 0.1164130905187314 Illumina Single End Adapter 2 (95% over 22bp) TGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG 1246 0.11072573342468651 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGC 1158 0.10290561742037478 No Hit CGTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCT 1132 0.10059512860091904 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7584623874636431 0.0 2 0.0 0.0 0.0 2.531229366668355 0.0 3 0.0 0.0 0.0 4.190160339037575 0.0 4 0.0 0.0 0.0 5.203931741051077 0.0 5 0.0 0.0 0.0 10.597412430252119 0.0 6 0.0 0.0 0.0 11.927898530440245 0.0 7 0.0 0.0 0.0 16.4306857797411 0.0 8 0.0 0.0 0.0 21.982968142802427 0.0 9 0.0 0.0 0.0 26.349703146619177 0.0 10 0.0 0.0 0.0 28.863248387323235 0.0 11 0.0 0.0 0.0 31.082739493274257 0.0 12 0.0 0.0 0.0 32.61654860957449 0.0 13 0.0 0.0 0.0 33.2617081799302 0.0 14 0.0 0.0 0.0 33.7358915776462 0.0 15 0.0 0.0 0.0 35.23539882147297 0.0 16 0.0 0.0 0.0 36.966843596791264 0.0 17 0.0 0.0 0.0 38.836651106413115 0.0 18 0.0 0.0 0.0 39.85602100056607 0.0 19 0.0 0.0 0.0 40.95759097771889 0.0 20 0.0 0.0 0.0 42.141538767780766 0.0 21 0.0 0.0 0.0 43.325842017661024 0.0 22 4.4432477297225723E-4 0.0 0.0 44.42385739663006 0.0 23 4.4432477297225723E-4 0.0 0.0 45.29837741479406 0.0 24 6.220546821611602E-4 0.0 0.0 46.06430445844364 0.0 25 6.220546821611602E-4 0.0 0.0 46.757006779507385 0.0 26 6.220546821611602E-4 0.0 0.0 47.52195630865642 0.0 27 6.220546821611602E-4 0.0 0.0 48.19288671584453 0.0 28 6.220546821611602E-4 0.0 0.0 48.88932136500125 0.0 29 6.220546821611602E-4 0.0 0.0 49.66431263401946 0.0 30 6.220546821611602E-4 0.0 0.0 50.33702034029946 0.0 31 6.220546821611602E-4 0.0 0.0 50.933926240310385 0.0 32 6.220546821611602E-4 0.0 0.0 51.52621116268241 0.0 33 6.220546821611602E-4 0.0 0.0 52.13058171887927 0.0 34 6.220546821611602E-4 0.0 0.0 52.80417807470521 0.0 35 6.220546821611602E-4 0.0 0.0 53.34367721404813 0.0 36 6.220546821611602E-4 0.0 0.0 53.86646974192728 0.0 37 6.220546821611602E-4 0.0 0.0 54.40819050513506 0.0 38 6.220546821611602E-4 0.0 0.0 54.925295675920175 0.0 39 6.220546821611602E-4 0.0 0.0 55.47039330740254 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGGT 20 7.033223E-4 45.000004 3 TATGCGC 20 7.033223E-4 45.000004 1 TATGCGA 20 7.033223E-4 45.000004 30 CCTCGGT 20 7.033223E-4 45.000004 13 GTCACGG 20 7.033223E-4 45.000004 1 GGCGGTT 20 7.033223E-4 45.000004 3 AGACACG 20 7.033223E-4 45.000004 23 CCAACGG 80 0.0 45.000004 1 AACACGT 20 7.033223E-4 45.000004 40 GAGGCCG 20 7.033223E-4 45.000004 8 TCACGGT 25 3.8907536E-5 45.0 41 CGAACGA 25 3.8907536E-5 45.0 32 GTATTCG 25 3.8907536E-5 45.0 24 CACGGAA 50 2.1827873E-11 45.0 25 GCAACTA 25 3.8907536E-5 45.0 8 TTGCTAC 25 3.8907536E-5 45.0 23 TTGTCGG 35 1.2119017E-7 45.0 1 TCGGGTA 50 2.1827873E-11 45.0 4 ATAGCGG 95 0.0 45.0 1 TAAACGG 75 0.0 45.0 1 >>END_MODULE