SRR1043347_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043347_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	751764
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43180	5.743823859615517	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	6518	0.8670274181791094	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	6379	0.8485375729617273	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	5357	0.7125906534497528	No Hit
TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	2623	0.3489126906848426	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	2497	0.3321521115669279	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCC	2237	0.2975667895775802	No Hit
ACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	1942	0.2583257511665895	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	1596	0.2123006688269191	No Hit
AGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	1574	0.20937421850474353	No Hit
ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1395	0.1855635545197695	No Hit
TCCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	1301	0.1730596304159284	No Hit
TGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCTT	1250	0.16627558648724866	Illumina Single End Adapter 1 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	1198	0.15935852208937912	No Hit
TGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	1185	0.15762925598991173	No Hit
CGGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCT	1037	0.1379422265498215	No Hit
GGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	988	0.13142422355952135	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	909	0.12091560649352723	No Hit
CGTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCT	867	0.11532874678755567	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGC	866	0.11519572631836587	No Hit
ATAGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	847	0.1126683374037597	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTC	840	0.11173719411943109	No Hit
ATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	809	0.10761355957454734	No Hit
GTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	765	0.10176065893019617	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATGT	20	7.0317264E-4	45.000004	9
TCGTTTC	20	7.0317264E-4	45.000004	45
GGTACTC	35	1.2111741E-7	45.000004	7
ATAGGTT	20	7.0317264E-4	45.000004	34
CAACGCA	40	6.8102963E-9	45.000004	16
GCGAAAA	20	7.0317264E-4	45.000004	10
CAGTTGA	40	6.8102963E-9	45.000004	43
AACTTCG	75	0.0	45.000004	10
TTGTCGC	20	7.0317264E-4	45.000004	37
GTGATGA	35	1.2111741E-7	45.000004	40
GGTCATG	20	7.0317264E-4	45.000004	8
TGACGTA	35	1.2111741E-7	45.000004	11
TATGCGC	20	7.0317264E-4	45.000004	1
CCATGGT	20	7.0317264E-4	45.000004	35
CCGTCGG	20	7.0317264E-4	45.000004	1
ATCGTAA	20	7.0317264E-4	45.000004	33
GAGACTA	20	7.0317264E-4	45.000004	10
TGCGCTC	20	7.0317264E-4	45.000004	14
CGCTCAG	20	7.0317264E-4	45.000004	16
TGACCAA	20	7.0317264E-4	45.000004	14

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content