##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043345_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1958415 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26679432091768 33.0 31.0 34.0 31.0 34.0 2 32.58043468825555 34.0 31.0 34.0 31.0 34.0 3 32.65645126288351 34.0 31.0 34.0 31.0 34.0 4 36.18354077149123 37.0 37.0 37.0 35.0 37.0 5 36.164491182920884 37.0 37.0 37.0 35.0 37.0 6 36.31137527030788 37.0 37.0 37.0 35.0 37.0 7 36.25368576118953 37.0 37.0 37.0 35.0 37.0 8 36.167119839257765 37.0 37.0 37.0 35.0 37.0 9 37.782747272666924 39.0 38.0 39.0 35.0 39.0 10 37.61885402225779 39.0 37.0 39.0 35.0 39.0 11 37.381725017424806 39.0 37.0 39.0 35.0 39.0 12 37.40172945979274 39.0 37.0 39.0 35.0 39.0 13 37.38156927923857 39.0 37.0 39.0 35.0 39.0 14 38.75628556766569 40.0 38.0 41.0 35.0 41.0 15 38.834918033205426 41.0 38.0 41.0 35.0 41.0 16 38.80437241340574 41.0 38.0 41.0 35.0 41.0 17 38.75287668854661 41.0 38.0 41.0 34.0 41.0 18 38.50705034428351 40.0 38.0 41.0 35.0 41.0 19 38.23137128749524 40.0 37.0 41.0 35.0 41.0 20 37.9106476410771 40.0 35.0 41.0 34.0 41.0 21 37.8723345154117 40.0 35.0 41.0 34.0 41.0 22 37.8257892224069 40.0 35.0 41.0 34.0 41.0 23 37.795216539905994 40.0 35.0 41.0 34.0 41.0 24 37.70232917946401 39.0 35.0 41.0 34.0 41.0 25 37.678958239188326 39.0 35.0 41.0 34.0 41.0 26 37.64869090565585 39.0 35.0 41.0 34.0 41.0 27 37.628697186245 39.0 35.0 41.0 34.0 41.0 28 37.53187654302076 39.0 35.0 41.0 34.0 41.0 29 37.455494366617906 39.0 35.0 41.0 34.0 41.0 30 37.31242203516619 39.0 35.0 41.0 33.0 41.0 31 37.12186436480521 39.0 35.0 41.0 33.0 41.0 32 36.84963503649635 39.0 35.0 41.0 33.0 41.0 33 36.355814268170946 39.0 35.0 41.0 31.0 41.0 34 36.02602614869678 39.0 35.0 41.0 30.0 41.0 35 35.793593799067104 39.0 35.0 41.0 29.0 41.0 36 35.707450157397695 39.0 35.0 41.0 28.0 41.0 37 35.594517505227444 38.0 35.0 41.0 27.0 41.0 38 35.532570982146275 38.0 35.0 41.0 27.0 41.0 39 35.47861255147658 38.0 35.0 41.0 27.0 41.0 40 35.387825869389275 38.0 35.0 41.0 26.0 41.0 41 35.304104084170106 38.0 35.0 41.0 26.0 41.0 42 35.19048312027839 38.0 35.0 40.0 25.0 41.0 43 35.04859899459512 38.0 35.0 40.0 24.0 41.0 44 34.91590801745289 37.0 35.0 40.0 24.0 41.0 45 34.84618786110196 37.0 35.0 40.0 23.0 41.0 46 34.75450249308752 37.0 35.0 40.0 23.0 41.0 47 34.60480694847619 37.0 35.0 40.0 23.0 41.0 48 34.528445196753495 37.0 35.0 40.0 23.0 41.0 49 34.450573550549805 36.0 34.0 40.0 23.0 41.0 50 34.36763045626182 36.0 34.0 40.0 23.0 41.0 51 33.9637758084982 36.0 34.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 14.0 15 25.0 16 63.0 17 155.0 18 324.0 19 678.0 20 1306.0 21 2142.0 22 3489.0 23 5661.0 24 9847.0 25 18725.0 26 31050.0 27 38307.0 28 38784.0 29 36759.0 30 36939.0 31 40058.0 32 46062.0 33 58640.0 34 120348.0 35 178724.0 36 192698.0 37 171933.0 38 275904.0 39 649510.0 40 269.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.728698973404516 16.97566654667167 23.193756175274395 32.101878304649425 2 37.57334374992022 18.603156123702075 22.787100793243518 21.03639933313419 3 24.17766408039154 19.78308989667665 36.85812251233778 19.181123510594027 4 22.37804551129357 22.34189382740635 34.629075042828 20.65098561847208 5 20.58899671417958 29.65566542331426 31.753739631283462 18.001598231222697 6 73.7686343292918 1.9183880842415932 20.94612224681694 3.366855339649666 7 73.38128027001427 1.7449825496638864 19.24331666168815 5.630420518633691 8 63.759315568967764 3.380386690257172 25.182507282675022 7.677790458100045 9 37.20186987946886 15.751513341145774 29.148571676585398 17.898045102799966 10 25.886290699366583 15.830454729972962 39.760367439996116 18.52288713066434 11 23.377629358435264 12.888892293002248 42.209031282950754 21.52444706561173 12 19.996221434169982 14.151392835532818 44.69956572023805 21.152820010059155 13 15.555283226486724 16.9094395212455 45.43868383361034 22.096593418657434 14 15.302323562676962 17.60301059785592 45.71344684349333 21.381218995973786 15 18.23561400418195 15.186107132553623 44.96998848558656 21.608290377677868 16 17.79260269146223 19.393540184281676 41.62365994949998 21.19019717475612 17 18.697211775849347 19.555201527766076 40.87805700017616 20.869529696208414 18 19.219266600797074 26.25163716576926 37.2399619079715 17.28913432546217 19 19.724777434813355 21.46659415905209 36.33356566407018 22.475062742064374 20 18.636193043864555 26.1666704962942 35.97470403361903 19.222432426222223 21 17.203299607080215 20.837514010054047 37.325388132750206 24.633798250115525 22 18.09790059818782 22.485070835343887 35.19693221303963 24.220096353428666 23 17.817827171462636 20.473086654258672 39.34574643270196 22.363339741576734 24 21.245599119696283 18.93469974443619 36.273057549089444 23.54664358677808 25 16.660054176464133 19.99162588113347 38.979787225894405 24.368532716507993 26 17.173990191047352 19.102079998366026 37.847749327900374 25.876180482686255 27 21.80967772407789 20.68126520681265 36.85424182310695 20.654815246002507 28 22.46408447647715 21.144650137994244 33.10830441964548 23.282960965883127 29 22.408120852832518 21.562743340915997 34.496008251570785 21.533127554680696 30 26.449399131440476 19.852023192224326 31.604741589499675 22.093836086835527 31 27.18565778959005 21.69723985978457 29.937526009553643 21.179576341071733 32 27.868352724014063 21.632136191767323 29.132640426058824 21.366870658159787 33 25.155342458059195 23.62359356928945 31.9516547820559 19.269409190595457 34 27.518273706032687 23.44727751778862 29.965201451173524 19.069247325005172 35 29.321772964361486 25.216922868748455 28.139439291467845 17.321864875422214 36 26.033450519935762 26.206753931112658 27.111618324001807 20.64817722494977 37 24.807816525098104 27.768322852919326 29.723066867849766 17.700793754132807 38 23.207440710983114 23.82559365609434 28.353745248070506 24.613220384852035 39 24.964218513440716 20.769346640012458 32.36622472764966 21.90021011889717 40 19.56000132760421 20.102940388017863 35.20408085109642 25.132977433281507 41 21.921094354363095 23.020146393895065 30.950794392404063 24.10796485933778 42 22.112984224487658 17.861331740208282 33.77169803131614 26.25398600398792 43 24.310220254644697 20.186477329881562 33.81765356168126 21.68564885379248 44 22.006520579141807 21.424059762614156 34.451022893513375 22.11839676473066 45 23.05696187988756 22.164760788699027 32.59794272409066 22.180334607322756 46 23.842801449131056 20.115399442916846 32.79958537899271 23.24221372895939 47 22.137391717281577 20.097578909475263 34.14220172945979 23.622827643783364 48 22.41486099728607 18.887212363058904 31.322932064960696 27.374994574694334 49 21.667879382051304 17.495576780202356 36.21765560414927 24.618888233597065 50 21.136122834026498 17.311703597041486 37.16020353193782 24.391970036994202 51 19.28661698363217 16.478019214517865 36.658215955249524 27.577147846600443 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 434.0 1 2721.5 2 5009.0 3 75772.0 4 146535.0 5 83823.0 6 21111.0 7 19065.5 8 17020.0 9 16709.5 10 16399.0 11 15898.5 12 15398.0 13 14545.0 14 13692.0 15 12770.0 16 11848.0 17 10967.5 18 10087.0 19 9237.5 20 8388.0 21 7870.0 22 7352.0 23 7053.0 24 6754.0 25 6965.5 26 7866.0 27 8555.0 28 9063.5 29 9572.0 30 10695.5 31 11819.0 32 13849.5 33 15880.0 34 18358.0 35 20836.0 36 23486.0 37 26136.0 38 27807.0 39 29478.0 40 33056.0 41 36634.0 42 41897.5 43 47161.0 44 55222.0 45 63283.0 46 73635.0 47 83987.0 48 118587.0 49 153187.0 50 187804.0 51 222421.0 52 228157.5 53 233894.0 54 202785.0 55 171676.0 56 146390.0 57 121104.0 58 105027.0 59 88950.0 60 81736.0 61 74522.0 62 70937.0 63 67352.0 64 65195.0 65 63038.0 66 52025.5 67 41013.0 68 33254.5 69 25496.0 70 21507.0 71 17518.0 72 16063.0 73 14608.0 74 12756.0 75 8645.0 76 6386.0 77 4597.0 78 2808.0 79 2292.5 80 1777.0 81 1200.0 82 623.0 83 473.5 84 324.0 85 248.5 86 173.0 87 109.5 88 46.0 89 35.5 90 25.0 91 21.0 92 17.0 93 10.5 94 4.0 95 4.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1958415.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.003984874081524 #Duplication Level Percentage of deduplicated Percentage of total 1 75.21555887744793 24.071976086094317 2 10.0820415395139 6.45331009860929 3 3.6530211130606034 3.5073369734127597 4 1.8409678418054127 2.356732278512437 5 1.2275782296350968 1.9643697546496708 6 0.8827104788694115 1.695015168835794 7 0.7219697881225593 1.6174137125032764 8 0.6140117669733482 1.5720658642178487 9 0.5401679185277823 1.5558773304624522 >10 4.83588404749166 29.435802874566626 >50 0.21774405346991496 4.795618041237217 >100 0.15706778772497748 8.763091672654053 >500 0.005477185002249421 1.1798681195289473 >1k 0.004510622943028935 2.588388854749871 >5k 0.0011276557357572338 2.435317915406133 >10k+ 1.6109367653674767E-4 6.007815254559262 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 116529 5.950168886574092 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 9224 0.4709931245420404 No Hit CCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC 7853 0.4009875332858459 Illumina PCR Primer Index 8 (95% over 23bp) CTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGCT 6884 0.351508745592737 Illumina PCR Primer Index 8 (95% over 24bp) CGCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTG 6381 0.3258247102886773 Illumina PCR Primer Index 8 (95% over 22bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 5823 0.29733228146230495 No Hit CGTTCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTC 5698 0.29094956891159435 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTT 5373 0.27435451627974666 No Hit GCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC 4455 0.22747987530732763 Illumina PCR Primer Index 8 (95% over 23bp) CGTTTTCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCT 3856 0.19689391676432216 No Hit CGTCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCT 3097 0.1581380861564071 Illumina PCR Primer Index 8 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCC 2954 0.15083626299839412 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTC 2362 0.12060773635822845 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2233 0.11402077700589507 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2177 0.1111613217831767 No Hit TCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC 1985 0.10135747530528513 Illumina PCR Primer Index 8 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.36064878996535465 0.0 2 0.0 0.0 0.0 1.164819509654491 0.0 3 0.0 0.0 0.0 2.071522123758243 0.0 4 0.0 0.0 0.0 2.6748671757518196 0.0 5 0.0 0.0 0.0 5.575222820495146 0.0 6 0.0 0.0 0.0 6.871066653390624 0.0 7 0.0 0.0 0.0 10.19211964777639 0.0 8 0.0 0.0 0.0 13.787731405243527 0.0 9 0.0 0.0 0.0 17.335600472831345 0.0 10 0.0 0.0 0.0 19.097382321928702 0.0 11 0.0 0.0 0.0 20.509697893449548 0.0 12 0.0 0.0 0.0 21.527612891036885 0.0 13 0.0 0.0 0.0 22.03394071225966 0.0 14 0.0 0.0 0.0 22.36088877995726 0.0 15 0.0 0.0 0.0 23.192428571063846 0.0 16 0.0 0.0 0.0 24.09509731083555 0.0 17 0.0 0.0 0.0 25.21385916672411 0.0 18 0.0 0.0 0.0 25.83216529693655 0.0 19 0.0 0.0 0.0 26.542178241077607 0.0 20 0.0 0.0 0.0 27.300648738903654 0.0 21 0.0 0.0 0.0 28.084854333734167 0.0 22 0.0 0.0 0.0 28.817079117551692 0.0 23 0.0 0.0 0.0 29.480472729222356 0.0 24 0.0 0.0 0.0 30.00845071141714 0.0 25 0.0 0.0 0.0 30.523561145109692 0.0 26 0.0 0.0 0.0 31.06062810997669 0.0 27 0.0 0.0 0.0 31.599992851361943 0.0 28 0.0 0.0 0.0 32.139357592747196 0.0 29 0.0 0.0 0.0 32.69061971032697 0.0 30 0.0 0.0 0.0 33.212112856570236 0.0 31 0.0 0.0 0.0 33.72130013301573 0.0 32 0.0 0.0 0.0 34.24953342371254 0.0 33 0.0 0.0 0.0 34.75509531942923 0.0 34 0.0 0.0 0.0 35.30314054988345 0.0 35 0.0 0.0 0.0 35.7858778655188 0.0 36 0.0 0.0 0.0 36.29327798245009 0.0 37 0.0 0.0 0.0 36.894121011123794 0.0 38 0.0 0.0 0.0 37.57441604562874 0.0 39 0.0 0.0 0.0 38.24899216968824 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGTTT 20 7.034503E-4 45.000004 8 ACTACGG 110 0.0 45.0 1 TCGGGTA 60 0.0 44.999996 4 CGTTTTT 27965 0.0 44.460934 1 TACGCGG 290 0.0 41.89655 1 CTTACGG 175 0.0 41.142857 1 CACTTAC 2325 0.0 41.129032 36 CCGCACT 2315 0.0 40.91793 33 AGGGCGA 825 0.0 40.909092 5 AATACGG 55 6.184564E-11 40.909092 1 ACCCGCA 2345 0.0 40.8742 31 CGCACTT 2330 0.0 40.751072 34 GCACTTA 2355 0.0 40.6051 35 ACTTACT 2285 0.0 40.568928 37 CCCGCAC 2375 0.0 40.54737 32 GAACGTA 50 1.0822987E-9 40.5 9 CATGCGG 250 0.0 40.499996 1 CTTACTG 2280 0.0 40.460526 38 TATGCGG 395 0.0 40.44304 1 ACATACG 195 0.0 40.384617 16 >>END_MODULE