##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043344_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2306704 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.2648293842643 33.0 31.0 34.0 31.0 34.0 2 32.601023798458755 34.0 31.0 34.0 31.0 34.0 3 32.72338973704472 34.0 31.0 34.0 31.0 34.0 4 36.172641136444035 37.0 37.0 37.0 35.0 37.0 5 36.104781541108004 37.0 35.0 37.0 35.0 37.0 6 36.27432041562333 37.0 37.0 37.0 35.0 37.0 7 36.195408253508035 37.0 37.0 37.0 35.0 37.0 8 36.17193753511504 37.0 37.0 37.0 35.0 37.0 9 37.73325489529649 39.0 38.0 39.0 35.0 39.0 10 37.62225495772323 39.0 37.0 39.0 35.0 39.0 11 37.424775783975754 39.0 37.0 39.0 35.0 39.0 12 37.43378387517428 39.0 37.0 39.0 35.0 39.0 13 37.42938582496931 39.0 37.0 39.0 35.0 39.0 14 38.66478013650646 40.0 38.0 41.0 34.0 41.0 15 38.78867119491708 40.0 38.0 41.0 35.0 41.0 16 38.74385486824491 40.0 38.0 41.0 35.0 41.0 17 38.65316096040064 40.0 38.0 41.0 34.0 41.0 18 38.49334288231173 40.0 38.0 41.0 34.0 41.0 19 38.27259544354195 40.0 37.0 41.0 34.0 41.0 20 37.874788442730406 40.0 35.0 41.0 34.0 41.0 21 37.87677222565184 40.0 35.0 41.0 34.0 41.0 22 37.8515561597847 40.0 35.0 41.0 34.0 41.0 23 37.85644625404907 40.0 35.0 41.0 34.0 41.0 24 37.78760994041715 40.0 35.0 41.0 34.0 41.0 25 37.676512027551 40.0 35.0 41.0 34.0 41.0 26 37.587285147986044 40.0 35.0 41.0 33.0 41.0 27 37.622779082188266 40.0 35.0 41.0 33.0 41.0 28 37.58897110335786 40.0 35.0 41.0 33.0 41.0 29 37.57384129042998 40.0 35.0 41.0 33.0 41.0 30 37.53194774882256 40.0 35.0 41.0 33.0 41.0 31 37.411619349513416 40.0 35.0 41.0 33.0 41.0 32 37.181604575186064 40.0 35.0 41.0 33.0 41.0 33 36.79404726397492 39.0 35.0 41.0 31.0 41.0 34 36.64614705657943 39.0 35.0 41.0 31.0 41.0 35 36.54383570670532 39.0 35.0 41.0 31.0 41.0 36 36.481516917645266 39.0 35.0 41.0 31.0 41.0 37 36.402072394204026 39.0 35.0 41.0 31.0 41.0 38 36.26824291283147 39.0 35.0 41.0 31.0 41.0 39 36.234235948782334 39.0 35.0 41.0 31.0 41.0 40 36.14378134342334 39.0 35.0 41.0 31.0 41.0 41 36.09484615277903 39.0 35.0 41.0 31.0 41.0 42 36.01281568853221 38.0 35.0 41.0 30.0 41.0 43 35.90547031608737 38.0 35.0 41.0 30.0 41.0 44 35.71951017555785 38.0 35.0 40.0 30.0 41.0 45 35.590971793520104 38.0 35.0 40.0 29.0 41.0 46 35.54150554210683 38.0 35.0 40.0 29.0 41.0 47 35.454843794435696 37.0 35.0 40.0 29.0 41.0 48 35.35255238643536 37.0 35.0 40.0 29.0 41.0 49 35.279404726397495 37.0 35.0 40.0 29.0 41.0 50 35.167331829311436 37.0 35.0 40.0 28.0 41.0 51 35.038104585590524 36.0 35.0 40.0 28.0 41.0 52 34.652152161699114 36.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 0.0 13 8.0 14 16.0 15 35.0 16 74.0 17 183.0 18 403.0 19 822.0 20 1500.0 21 2539.0 22 4043.0 23 6470.0 24 10960.0 25 19214.0 26 28255.0 27 34659.0 28 35324.0 29 35391.0 30 37208.0 31 42653.0 32 52263.0 33 68543.0 34 131882.0 35 197123.0 36 232338.0 37 238694.0 38 336964.0 39 787017.0 40 2118.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.247572293627616 17.217900519529163 22.93523573028876 28.59929145655446 2 35.501694192232726 19.640057848774703 23.23458059638341 21.62366736260916 3 26.90765698589849 20.639882707100693 32.68750563574694 19.764954671253875 4 23.59440136229009 23.307108324258337 30.781192558733157 22.31729775471842 5 21.772624489314623 31.29564955018069 28.066063092620464 18.865662867884218 6 76.8016182397048 2.350670046958778 17.651202755099916 3.1965089582365143 7 75.97541773890364 2.5767502028868896 15.984755738057418 5.463076320152044 8 65.03586936165195 4.24987341245344 22.50895650243811 8.2053007234565 9 38.151145530592565 15.41589211272881 27.200152251871067 19.23281010480755 10 24.65101720897003 15.82587102636489 36.322085538499955 23.201026226165126 11 21.677770533193684 13.222719516678344 40.09443777788568 25.005072172242297 12 20.96272430272805 14.879412356331805 42.59735969591244 21.56050364502771 13 18.1056173657305 18.337333268594495 42.677517358100566 20.879532007574443 14 15.12664823921925 18.62289223064598 44.23419736559177 22.016262164543 15 18.266756376197378 16.936546691729845 42.441206153888835 22.35549077818394 16 19.326580263440825 19.724767460411044 37.25900679064154 23.689645485506595 17 18.049606711567673 19.5581661106063 39.684675623747125 22.707551554078893 18 21.66684585451796 23.756060595551055 35.5726178998259 19.004475650105086 19 22.088529781020885 19.709464239885136 33.65056808329114 24.55143789580284 20 20.082290575643864 23.950147049643128 36.281031289666984 19.68653108504602 21 20.573424245156726 19.13062967766996 34.381394405177254 25.914551671996062 22 20.620287648523608 21.303123417655666 32.39492366597535 25.68166526784538 23 18.685318965935814 19.640014496875192 36.876989852187364 24.79767668500163 24 24.236659753483757 18.22708938814863 33.40051432693575 24.13573653143186 25 17.99194868522359 20.256001636967724 34.810968377390424 26.941081300418258 26 18.896009197538998 20.309714640456686 34.71446704908822 26.07980911291609 27 22.45754114962301 19.724507349014004 34.3137654419466 23.50418605941638 28 21.892535843350515 21.860065270619895 31.267600871199775 24.979798014829818 29 23.51359342160936 18.884260832772647 32.86910674278104 24.73303900283695 30 23.872850612822454 19.757411440739688 29.45245683884885 26.91728110758901 31 26.68890330098704 21.680371647164094 28.890919684536897 22.739805367311973 32 24.908744251538124 18.993420915730844 31.522683447897954 24.575151384833077 33 22.397585472605066 20.812640026635407 33.83290617261686 22.956868328142665 34 20.26688296374394 24.639528955600717 32.40567493705304 22.6879131436023 35 25.14089367339719 22.07821202893826 33.12661702585161 19.65427727181294 36 24.382538895324238 22.428105209857875 32.285590175419124 20.903765719398763 37 21.401879044732226 26.173709327247884 33.30843489238325 19.11597673563665 38 19.377778856758386 21.73304420506489 34.887397776220965 24.00177916195576 39 23.028008795233372 18.705824414402542 39.28856931795324 18.97759747241085 40 19.2153392893063 18.152654176695407 39.40050392247987 23.231502611518426 41 22.6485496188501 22.69775402479035 31.350836518252883 23.302859838106667 42 20.171422081029903 17.561984545914864 34.80802044822396 27.458572924831277 43 23.463348570080946 19.613309726778986 35.324384923249795 21.59895677989027 44 23.066938800990506 20.245076958292003 33.74576885460813 22.942215386109357 45 22.83704367790579 21.503452545276723 32.337959270023376 23.32154450679411 46 22.91785161858652 21.010541447884084 32.91761751832919 23.153989415200215 47 21.160452316378695 20.202158577780242 35.51248881520993 23.124900290631135 48 22.296055323960072 18.71527512849503 32.232007227628685 26.75666231991621 49 21.04609000547968 18.863798736205425 36.37458468880273 23.715526569512168 50 21.629606572841595 16.943136180454882 36.87083388245739 24.55642336424613 51 20.613871567396597 16.57295431056607 35.690361658886445 27.122812463150886 52 17.515511309643543 17.07457913975959 40.22739805367312 25.18251149692375 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 524.0 1 3787.5 2 7051.0 3 67094.0 4 127137.0 5 71468.0 6 15799.0 7 14780.5 8 13762.0 9 13559.5 10 13357.0 11 13115.0 12 12873.0 13 12527.0 14 11429.5 15 10678.0 16 10580.5 17 10483.0 18 9657.5 19 8832.0 20 8713.0 21 8594.0 22 8199.0 23 7804.0 24 7953.0 25 8102.0 26 8817.5 27 9533.0 28 9820.0 29 10107.0 30 11862.5 31 13618.0 32 15544.0 33 17470.0 34 18800.5 35 20131.0 36 22789.5 37 25448.0 38 28378.0 39 36720.0 40 42132.0 41 55155.5 42 68179.0 43 94587.5 44 120996.0 45 162057.0 46 203118.0 47 227193.5 48 251269.0 49 237063.5 50 222858.0 51 196121.5 52 169385.0 53 146793.0 54 124201.0 55 117972.5 56 111744.0 57 107314.0 58 102884.0 59 98194.5 60 93505.0 61 90383.5 62 87262.0 63 90012.0 64 82646.5 65 72531.0 66 63469.5 67 54408.0 68 43422.5 69 32437.0 70 27998.0 71 23559.0 72 22400.5 73 21242.0 74 17259.0 75 13276.0 76 10237.5 77 7199.0 78 5385.5 79 3572.0 80 2717.0 81 1862.0 82 1390.5 83 919.0 84 686.5 85 454.0 86 281.0 87 108.0 88 68.5 89 19.5 90 10.0 91 8.0 92 6.0 93 4.5 94 3.0 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2306704.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.147868346663024 #Duplication Level Percentage of deduplicated Percentage of total 1 72.59615628253849 20.43427049514667 2 11.405388606841274 6.420747538957972 3 4.357456897737812 3.679593692513479 4 2.2097407491056966 2.487979667443347 5 1.3200536770091222 1.85783485554906 6 0.8483488377825622 1.4327526838768887 7 0.6417493985003525 1.2644714306376674 8 0.5030408811337119 1.1327622796112868 9 0.4134644133243674 1.04743276850561 >10 5.085798496668627 32.36970458895276 >50 0.4407376592284228 8.211534067492115 >100 0.16428390481138158 8.440633889364946 >500 0.006657847176239716 1.242402719634176 >1k 0.006038512555194161 3.173494104356199 >5k 6.19334621045555E-4 1.3119601876433016 >10k+ 4.645009657841662E-4 5.4924250303145685 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 103213 4.47447960379832 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 12109 0.5249481511281898 No Hit CCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGCT 10702 0.46395202852208167 Illumina PCR Primer Index 5 (95% over 24bp) CTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGCTT 9678 0.41955968342708905 Illumina PCR Primer Index 5 (96% over 25bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 8011 0.34729206694920545 No Hit GCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGCT 7362 0.31915668416927356 Illumina PCR Primer Index 5 (95% over 24bp) CGCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGC 5052 0.21901379630849907 Illumina PCR Primer Index 5 (95% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCG 4184 0.18138434753657168 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3453 0.1496941089970798 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3227 0.1398965797085365 No Hit AGCCCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCT 3014 0.13066262511358198 Illumina PCR Primer Index 5 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGCT 2953 0.1280181592436654 Illumina PCR Primer Index 5 (95% over 24bp) CGTTCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCT 2871 0.12446330348410545 Illumina PCR Primer Index 5 (95% over 21bp) CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA 2842 0.12320609839840742 No Hit GCCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGC 2766 0.11991135403588843 Illumina PCR Primer Index 5 (95% over 23bp) GGGCCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCT 2323 0.10070646255436327 Illumina PCR Primer Index 5 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4335189950682879 0.0 2 0.0 0.0 0.0 1.4435749016778918 0.0 3 0.0 0.0 0.0 2.3190231603187925 0.0 4 0.0 0.0 0.0 2.9267300876055184 0.0 5 0.0 0.0 0.0 5.98165174205273 0.0 6 0.0 0.0 0.0 6.851290846159715 0.0 7 0.0 0.0 0.0 9.657979524030825 0.0 8 0.0 0.0 0.0 12.686716631175912 0.0 9 0.0 0.0 0.0 15.324029437673842 0.0 10 0.0 0.0 0.0 16.92159028639999 0.0 11 0.0 0.0 0.0 18.38515041375053 0.0 12 0.0 0.0 0.0 19.42871733867891 0.0 13 0.0 0.0 0.0 19.91703313472383 0.0 14 0.0 0.0 0.0 20.269440725814842 0.0 15 0.0 0.0 0.0 21.32670685098738 0.0 16 0.0 0.0 0.0 22.409637300667967 0.0 17 0.0 0.0 0.0 23.82420978157579 0.0 18 4.335189950682879E-5 0.0 0.0 24.542767515901478 0.0 19 4.335189950682879E-5 0.0 0.0 25.387349222093516 0.0 20 4.335189950682879E-5 0.0 0.0 26.353012783608126 0.0 21 4.335189950682879E-5 0.0 0.0 27.28898029396056 0.0 22 8.670379901365758E-5 0.0 0.0 28.095195569089054 0.0 23 8.670379901365758E-5 0.0 0.0 28.855414478840803 0.0 24 2.6011139704097274E-4 0.0 0.0 29.44946555778288 0.0 25 2.6011139704097274E-4 0.0 0.0 30.0590366167484 0.0 26 2.6011139704097274E-4 0.0 0.0 30.60284284416206 0.0 27 3.034632965478015E-4 0.0 0.0 31.161735532604098 0.0 28 3.468151960546303E-4 0.0 0.0 31.737318702356262 0.0 29 3.468151960546303E-4 0.0 0.0 32.31758387725517 0.0 30 3.468151960546303E-4 0.0 0.0 32.889568839348264 0.0 31 3.468151960546303E-4 0.0 0.0 33.4490684543834 0.0 32 3.468151960546303E-4 0.0 0.0 34.05257024741796 0.0 33 3.901670955614591E-4 0.0 0.0 34.58137671760226 0.0 34 3.901670955614591E-4 0.0 0.0 35.18782643980329 0.0 35 3.901670955614591E-4 0.0 0.0 35.70189326415526 0.0 36 3.901670955614591E-4 0.0 0.0 36.298675512766266 0.0 37 3.901670955614591E-4 0.0 0.0 36.897712060151626 0.0 38 3.901670955614591E-4 0.0 0.0 37.64171735948782 0.0 39 4.335189950682879E-4 0.0 0.0 38.30677884982208 0.0 40 4.335189950682879E-4 0.0 0.0 38.9404535649134 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTAACG 25 3.418234E-5 46.0 9 CGTTTTT 23885 0.0 45.11409 1 CTTACGG 170 0.0 43.294117 1 CGGTCTA 210 0.0 42.714283 30 GCGCGAC 1770 0.0 42.101696 8 TCACGAC 230 0.0 42.0 24 ATAGCGG 205 0.0 41.512196 1 CACTTAC 3335 0.0 41.24138 36 ACCCGCA 3390 0.0 41.18289 31 CCCGCAC 3405 0.0 41.00147 32 TAGGGTA 735 0.0 40.9932 4 CCGCACT 3370 0.0 40.94956 33 ACTTACT 3340 0.0 40.83533 37 CATGCGG 400 0.0 40.824997 1 CGCACTT 3400 0.0 40.72353 34 GCACTTA 3385 0.0 40.564255 35 GTTTTTT 27360 0.0 40.519005 2 CTTATGA 3845 0.0 40.436928 25 AACGCAA 4065 0.0 40.341946 17 CGCATCG 40 2.9122748E-7 40.25 20 >>END_MODULE