SRR1043341_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043341_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2224240
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	109139	4.906799625939646	No Hit
CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	9912	0.44563536309031404	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9819	0.4414541596230622	No Hit
CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGCT	9350	0.42036830557853466	No Hit
CGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTG	6036	0.2713735927777578	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	5544	0.2492536776606841	No Hit
GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	5512	0.24781498399453297	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC	4385	0.19714599143977268	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCC	3748	0.16850699564795166	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTT	3560	0.16005467035931376	No Hit
GGGCCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC	3115	0.14004783656439954	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCT	3051	0.13717044923209726	No Hit
CGTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT	2623	0.11792792144732582	No Hit
TCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	2406	0.10817178002373845	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTC	2349	0.10560910693090672	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAG	25	3.891986E-5	45.000004	35
TATCGTG	20	7.0347096E-4	45.000004	11
CGTTTTT	27360	0.0	44.5477	1
TCACGAC	240	0.0	43.125004	24
ATTACGG	170	0.0	41.029415	1
TCGGGTA	55	6.184564E-11	40.909092	4
ACGGGTA	155	0.0	40.64516	4
AATACGG	50	1.0822987E-9	40.500004	1
GTTTTTT	30675	0.0	40.38631	2
CTAGCGG	565	0.0	40.221237	1
CACTTAC	2500	0.0	40.140003	36
GCACTTA	2495	0.0	40.04008	35
CGCACTT	2490	0.0	40.03012	34
TAAACGG	90	0.0	40.000004	1
CGTTCTG	590	0.0	39.66102	1
TATACGG	125	0.0	39.600002	1
CCCGCAC	2550	0.0	39.52941	32
CGGTCTA	245	0.0	39.489796	30
CTTACTG	2520	0.0	39.374996	38
ACCCGCA	2550	0.0	39.352943	31