##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043341_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2224240 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.29941598028989 33.0 31.0 34.0 31.0 34.0 2 32.58488787181239 34.0 31.0 34.0 31.0 34.0 3 32.66281291587239 34.0 31.0 34.0 31.0 34.0 4 36.169286587778295 37.0 37.0 37.0 35.0 37.0 5 36.13958700499946 37.0 37.0 37.0 35.0 37.0 6 36.32631775347984 37.0 37.0 37.0 35.0 37.0 7 36.27170179477035 37.0 37.0 37.0 35.0 37.0 8 36.178442524188036 37.0 37.0 37.0 35.0 37.0 9 37.79027533000036 39.0 38.0 39.0 35.0 39.0 10 37.55930295291875 39.0 37.0 39.0 35.0 39.0 11 37.17309373089235 39.0 35.0 39.0 34.0 39.0 12 37.157578768478224 39.0 37.0 39.0 34.0 39.0 13 37.12700338093011 39.0 35.0 39.0 34.0 39.0 14 38.39036614753804 40.0 37.0 41.0 34.0 41.0 15 38.46994344135525 40.0 37.0 41.0 34.0 41.0 16 38.37347858144805 40.0 37.0 41.0 34.0 41.0 17 38.32070729777362 40.0 37.0 41.0 34.0 41.0 18 38.12737879005863 40.0 37.0 41.0 34.0 41.0 19 37.91946507571125 40.0 36.0 41.0 34.0 41.0 20 37.63274781498399 39.0 35.0 41.0 34.0 41.0 21 37.56723644930403 39.0 35.0 41.0 34.0 41.0 22 37.54603549976621 39.0 35.0 41.0 34.0 41.0 23 37.524322015609826 39.0 35.0 41.0 34.0 41.0 24 37.464782577419705 39.0 35.0 41.0 34.0 41.0 25 37.42525941445168 39.0 35.0 41.0 34.0 41.0 26 37.41047458907312 39.0 35.0 41.0 34.0 41.0 27 37.38517695932094 39.0 35.0 41.0 34.0 41.0 28 37.31711775707657 39.0 35.0 41.0 34.0 41.0 29 37.250332697910295 39.0 35.0 41.0 33.0 41.0 30 37.1324227601338 39.0 35.0 41.0 33.0 41.0 31 36.99309112326008 39.0 35.0 41.0 33.0 41.0 32 36.75061953745999 39.0 35.0 41.0 33.0 41.0 33 36.336874617846995 39.0 35.0 41.0 31.0 41.0 34 36.059373988418514 38.0 35.0 41.0 30.0 41.0 35 35.87594054598425 38.0 35.0 41.0 30.0 41.0 36 35.805908085458405 38.0 35.0 41.0 30.0 41.0 37 35.6934602381038 38.0 35.0 41.0 29.0 41.0 38 35.588027371147 38.0 35.0 41.0 29.0 41.0 39 35.5340170125526 38.0 35.0 41.0 29.0 41.0 40 35.46656610797396 38.0 35.0 40.0 29.0 41.0 41 35.398601769593206 37.0 35.0 40.0 29.0 41.0 42 35.297216127755995 37.0 35.0 40.0 28.0 41.0 43 35.1832720389886 37.0 35.0 40.0 27.0 41.0 44 35.06714877890875 37.0 35.0 40.0 27.0 41.0 45 35.00376488148761 37.0 35.0 40.0 26.0 41.0 46 34.91508065676366 36.0 35.0 40.0 26.0 41.0 47 34.79104593029529 36.0 35.0 40.0 25.0 41.0 48 34.736358036902494 36.0 35.0 40.0 25.0 41.0 49 34.67389715138654 36.0 35.0 40.0 26.0 41.0 50 34.593741232960475 36.0 35.0 40.0 25.0 41.0 51 34.175044059993525 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 5.0 14 20.0 15 50.0 16 106.0 17 231.0 18 464.0 19 936.0 20 1687.0 21 2681.0 22 4182.0 23 6506.0 24 10805.0 25 18985.0 26 29706.0 27 37856.0 28 40458.0 29 40908.0 30 43631.0 31 48668.0 32 56215.0 33 73082.0 34 175007.0 35 231380.0 36 204066.0 37 196545.0 38 302405.0 39 697424.0 40 228.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.027353163327696 16.901413516526993 23.030068697622557 31.04116462252275 2 36.24977520411466 18.956317663561485 23.632027119375607 21.16188001294824 3 25.366507211452 20.501294824299535 34.833606085674205 19.298591878574253 4 23.384391972089343 22.779466244649857 32.6887386253282 21.147403157932597 5 21.69568032226738 30.009081753767582 30.066629500413622 18.228608423551414 6 75.82873251088013 1.9533863252167032 18.945662338596556 3.2722188253066213 7 75.55735891810237 1.744416070208251 17.188118188684676 5.510106823004712 8 65.76934143797432 3.1796928389022767 23.3214940833723 7.7294716397511065 9 42.852479948207026 13.384077257849873 26.505817717512496 17.257625076430603 10 30.920134517857782 14.335278567061108 36.05708017120455 18.68750674387656 11 27.364133366902855 11.87686580584829 38.726081717800234 22.03291910944862 12 22.55682839981297 13.003452864798762 41.9285688594756 22.51114987591267 13 17.3384167176204 15.808590799554004 44.67912635327123 22.173866129554366 14 17.34394669639967 16.307727583354314 44.4238931050606 21.924432615185413 15 21.417293097867137 14.273010106823007 43.12335899003705 21.18633780527281 16 20.326268747976837 18.668039420206455 40.055974175448696 20.949717656368016 17 20.935016005467038 19.19630975074632 39.58722979534583 20.281444448440816 18 20.37815163831241 25.757921806999246 36.22518253425889 17.63874402042945 19 22.169999640326584 21.95527461065353 33.803231665647594 22.071494083372297 20 20.417760673308635 27.054499514440888 34.106391396611876 18.4213484156386 21 18.682201560982627 20.826394633672628 36.57500989101896 23.91639391432579 22 20.623628745099452 21.935852246160486 33.47327626515124 23.96724274358882 23 21.378628205589326 19.260466496421248 36.892646476998884 22.468258820990542 24 23.619393590619715 17.546532748264575 33.8471118224652 24.986961838650508 25 17.407923605366328 18.42818221055282 37.97288062439305 26.191013559687804 26 16.560757831888644 17.6510178757688 37.49366075603352 28.29456353630903 27 20.619807215048734 20.76560982627774 36.070163291731106 22.544419666942417 28 22.403427687659605 21.567951300219402 32.032064885084345 23.99655612703665 29 22.482106247527245 19.029870877243464 33.636972628853 24.851050246376293 30 26.182696111930365 18.072555119951083 32.48156673740244 23.26318203071611 31 26.01841527892673 20.16594432255512 29.30560551019674 24.510034888321407 32 26.069533863252165 18.82786929468043 30.570262201920656 24.532334640146747 33 21.497275473869728 20.70896126317304 35.69237132683523 22.101391936122 34 21.329937416825523 25.711703772974136 32.82496493184189 20.13339387835845 35 24.953467251735425 27.990234866740998 28.907132323849943 18.149165557673633 36 26.334478293709314 25.62511239794267 29.393006150415424 18.647403157932597 37 23.84063770096752 30.009666223069452 29.288835737150663 16.86086033881236 38 21.94115742905442 26.31833794914218 29.905360932273496 21.835143689529907 39 22.68891846203647 22.187084127612128 34.55360033089954 20.57039707945186 40 18.64281732187174 20.490594540157538 37.54720713592059 23.31938100205014 41 19.616093587022984 23.135947559615868 31.60845951875697 25.63949933460418 42 19.323319425961227 18.156134230119054 35.119411574290545 27.401134769629177 43 22.81210660720066 19.031219652555478 34.28964500233788 23.867028737905983 44 22.116048627845917 19.989434593389202 34.325657303168725 23.56885947559616 45 22.111912383555733 21.566557565730317 33.03960004316081 23.281930007553143 46 22.454726108693308 20.211398050570082 33.12070639859008 24.21316944214653 47 20.407824695176778 19.82191669963673 35.44059993525879 24.329658669927706 48 22.142439664784376 18.16328273927274 32.262345790022664 27.43193180592022 49 21.276750710354996 16.992545768442255 36.40569363018379 25.325009891018958 50 20.396719778441174 16.906269107650253 37.8335970938388 24.863414020069776 51 18.720641657375104 15.897834766032442 36.7641081897637 28.61741538682876 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 495.0 1 3352.0 2 6209.0 3 77194.0 4 148179.0 5 84305.5 6 20432.0 7 17885.5 8 15339.0 9 14776.5 10 14214.0 11 13881.0 12 13548.0 13 12661.5 14 11775.0 15 11119.0 16 10463.0 17 9742.5 18 9022.0 19 8384.5 20 7747.0 21 7241.5 22 6736.0 23 6732.5 24 6729.0 25 6795.5 26 7638.0 27 8414.0 28 8322.5 29 8231.0 30 9286.0 31 10341.0 32 11560.5 33 12780.0 34 15839.0 35 18898.0 36 21045.0 37 23192.0 38 25915.5 39 28639.0 40 35416.0 41 42193.0 42 53103.5 43 64014.0 44 96056.5 45 128099.0 46 170484.0 47 212869.0 48 234369.5 49 255870.0 50 228699.5 51 201529.0 52 173336.5 53 145144.0 54 132180.5 55 119217.0 56 115267.5 57 111318.0 58 108773.5 59 106229.0 60 103383.5 61 100538.0 62 98618.0 63 96698.0 64 91839.0 65 86980.0 66 72447.0 67 57914.0 68 46361.0 69 34808.0 70 28953.0 71 23098.0 72 21128.5 73 19159.0 74 16525.5 75 10846.0 76 7800.0 77 5967.0 78 4134.0 79 3112.0 80 2090.0 81 1785.0 82 1480.0 83 1027.5 84 575.0 85 366.0 86 157.0 87 137.5 88 118.0 89 76.0 90 34.0 91 32.0 92 30.0 93 18.5 94 7.0 95 4.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2224240.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.12043119202843 #Duplication Level Percentage of deduplicated Percentage of total 1 72.93340951623935 21.967857429339187 2 11.070878337667716 6.669192584100771 3 4.0558597401491525 3.664927326830426 4 2.115576304899327 2.5488828209282373 5 1.2920481551768417 1.9458523777395664 6 1.0117627726490561 1.828483858573908 7 0.7542538978809435 1.590291684270954 8 0.6047877532399483 1.4573174325796263 9 0.521075533878522 1.412551778763375 >10 5.1943856544047184 30.905199795086112 >50 0.2621383538945692 5.380146630119617 >100 0.17042528195777298 9.226909251546498 >500 0.007226264069527521 1.481163980783499 >1k 0.005118603715915327 2.8785295585395705 >5k 9.032830086909402E-4 2.0937357483687395 >10k+ 1.505471681151567E-4 4.948957742429902 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 109139 4.906799625939646 No Hit CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC 9912 0.44563536309031404 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 9819 0.4414541596230622 No Hit CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGCT 9350 0.42036830557853466 No Hit CGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTG 6036 0.2713735927777578 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 5544 0.2492536776606841 No Hit GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC 5512 0.24781498399453297 No Hit CGTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC 4385 0.19714599143977268 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCC 3748 0.16850699564795166 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTT 3560 0.16005467035931376 No Hit GGGCCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC 3115 0.14004783656439954 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCT 3051 0.13717044923209726 No Hit CGTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT 2623 0.11792792144732582 No Hit TCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC 2406 0.10817178002373845 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTC 2349 0.10560910693090672 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.43457540553177715 0.0 2 0.0 0.0 0.0 1.3249469481710607 0.0 3 0.0 0.0 0.0 2.1673920080566846 0.0 4 0.0 0.0 0.0 2.7658885731755567 0.0 5 0.0 0.0 0.0 5.602452972700788 0.0 6 0.0 0.0 0.0 6.758443333453225 0.0 7 0.0 0.0 0.0 9.899651116785959 0.0 8 0.0 0.0 0.0 13.59799302233572 0.0 9 0.0 0.0 0.0 17.038494047404956 0.0 10 0.0 0.0 0.0 18.983113333093552 0.0 11 0.0 0.0 0.0 20.54364636909686 0.0 12 0.0 0.0 0.0 21.628556270906017 0.0 13 0.0 0.0 0.0 22.204887961730748 0.0 14 0.0 0.0 0.0 22.556603603927634 0.0 15 0.0 0.0 0.0 23.403094989749306 0.0 16 0.0 0.0 0.0 24.2940060425134 0.0 17 4.495917706722296E-5 0.0 0.0 25.398338308815596 0.0 18 4.495917706722296E-5 0.0 0.0 26.0882818400892 8.991835413444592E-5 19 4.495917706722296E-5 0.0 0.0 26.837481566737402 8.991835413444592E-5 20 4.495917706722296E-5 0.0 0.0 27.676060137395247 8.991835413444592E-5 21 4.495917706722296E-5 0.0 0.0 28.51684170772938 8.991835413444592E-5 22 8.991835413444592E-5 0.0 0.0 29.274089127072617 8.991835413444592E-5 23 8.991835413444592E-5 0.0 0.0 29.99222206236737 8.991835413444592E-5 24 1.3487753120166888E-4 0.0 0.0 30.58671726072726 8.991835413444592E-5 25 1.7983670826889184E-4 0.0 0.0 31.152078912347587 8.991835413444592E-5 26 1.7983670826889184E-4 0.0 0.0 31.711146279178507 8.991835413444592E-5 27 1.7983670826889184E-4 0.0 0.0 32.270753156134234 8.991835413444592E-5 28 2.247958853361148E-4 0.0 0.0 32.79425781390498 8.991835413444592E-5 29 2.247958853361148E-4 0.0 0.0 33.368431464230476 8.991835413444592E-5 30 2.247958853361148E-4 0.0 0.0 33.916393914325795 8.991835413444592E-5 31 2.6975506240333775E-4 0.0 0.0 34.46183865050534 8.991835413444592E-5 32 2.6975506240333775E-4 0.0 0.0 35.05345646153293 8.991835413444592E-5 33 2.6975506240333775E-4 0.0 0.0 35.6007894831493 8.991835413444592E-5 34 2.6975506240333775E-4 0.0 0.0 36.210930475128585 8.991835413444592E-5 35 2.6975506240333775E-4 0.0 0.0 36.74787792684243 8.991835413444592E-5 36 2.6975506240333775E-4 0.0 0.0 37.31364421105636 8.991835413444592E-5 37 2.6975506240333775E-4 0.0 0.0 38.09512462683883 8.991835413444592E-5 38 2.6975506240333775E-4 0.0 0.0 38.879662266661875 8.991835413444592E-5 39 2.6975506240333775E-4 0.0 0.0 39.733437039168436 8.991835413444592E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATAG 25 3.891986E-5 45.000004 35 TATCGTG 20 7.0347096E-4 45.000004 11 CGTTTTT 27360 0.0 44.5477 1 TCACGAC 240 0.0 43.125004 24 ATTACGG 170 0.0 41.029415 1 TCGGGTA 55 6.184564E-11 40.909092 4 ACGGGTA 155 0.0 40.64516 4 AATACGG 50 1.0822987E-9 40.500004 1 GTTTTTT 30675 0.0 40.38631 2 CTAGCGG 565 0.0 40.221237 1 CACTTAC 2500 0.0 40.140003 36 GCACTTA 2495 0.0 40.04008 35 CGCACTT 2490 0.0 40.03012 34 TAAACGG 90 0.0 40.000004 1 CGTTCTG 590 0.0 39.66102 1 TATACGG 125 0.0 39.600002 1 CCCGCAC 2550 0.0 39.52941 32 CGGTCTA 245 0.0 39.489796 30 CTTACTG 2520 0.0 39.374996 38 ACCCGCA 2550 0.0 39.352943 31 >>END_MODULE