SRR1043338_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043338_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3048626
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	114861	3.767631713434183	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	23808	0.7809419718915996	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	12216	0.40070510452905667	No Hit
CCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT	10771	0.35330670275724213	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCTT	8992	0.2949525458354026	Illumina Single End Adapter 2 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT	6369	0.2089137860793682	Illumina Single End Adapter 2 (95% over 21bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	6157	0.2019598337086937	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	5931	0.19454665806825763	No Hit
CGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	5006	0.16420512060187115	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4193	0.13753736929357685	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3917	0.12848411054684963	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA	3864	0.126745622454181	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCG	3645	0.1195620584486257	No Hit
GGGCCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCT	3177	0.10421088057374042	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCT	3069	0.10066830106415152	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	20	6.3131034E-4	46.0	1
GTAACGA	45	3.110472E-10	46.0	8
CGTTTTT	28340	0.0	45.326397	1
ACTTACT	6335	0.0	42.369377	37
CACTTAC	6415	0.0	42.342945	36
TCACGAC	610	0.0	42.229507	24
CGCACTT	6475	0.0	41.9861	34
TATACGG	170	0.0	41.941177	1
CCGCACT	6470	0.0	41.911903	33
GCACTTA	6550	0.0	41.50534	35
ACCCGCA	6630	0.0	41.420815	31
CCCGCAC	6665	0.0	41.375847	32
CTTACTG	6550	0.0	40.838165	38
ATCAACG	7605	0.0	40.798157	14
TCAACGC	7645	0.0	40.61478	15
TTATGAC	7400	0.0	40.591892	26
AACGCAA	7555	0.0	40.550632	17
GGACTTA	8255	0.0	40.511208	7
CTTAATC	8200	0.0	40.47439	10
CTTATGA	7385	0.0	40.45633	25