FastQCFastQC Report
Thu 26 May 2016
SRR1043334_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043334_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences2725430
Sequences flagged as poor quality0
Sequence length52
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1439855.283019560216186No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC172050.6312765325104662No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA111140.4077888626748806No Hit
CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT108050.39645120219561686Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCTT92170.3381851671112448Illumina Single End Adapter 2 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC68950.25298760195638853No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT57000.20914130981166276No Hit
GCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT56800.20840748065442885Illumina Single End Adapter 2 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC50380.1848515647072205No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCG42360.15542501550214094No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC41950.15392066572981145No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC39570.14518809875872798No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTT38160.14001460320022896No Hit
CGTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG30460.11176218064672364No Hit
GGGCCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT29000.10640522779891615No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCT27540.10104827495110863No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTTTT345500.045.374241
CGGTCTA4450.043.93258330
CACTTAC42000.042.3309536
ACGTAGG1750.042.0571441
TATACGG1150.042.01
ACCCGCA42750.041.91110631
GCACTTA42550.041.78378335
CCGCACT42550.041.7297333
CGCACTT42900.041.3892834
GTTTTTT388150.041.3247452
CCCGCAC43650.041.3104232
AAGCTTA48250.040.94714722
TCAACGC49550.040.94046415
TAGTAGG4950.040.8888851
GTTGATC18700.040.83422515
GGGCGAT23550.040.8237766
AACGCAA49300.040.82150317
CTTATGA48050.040.78251625
CGCAAGC49450.040.74418619
GACGGTC4800.040.72916828