SRR1043334_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043334_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2725430
Sequences flagged as poor quality	0
Sequence length	52
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	143985	5.283019560216186	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	17205	0.6312765325104662	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	11114	0.4077888626748806	No Hit
CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT	10805	0.39645120219561686	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCTT	9217	0.3381851671112448	Illumina Single End Adapter 2 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	6895	0.25298760195638853	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT	5700	0.20914130981166276	No Hit
GCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT	5680	0.20840748065442885	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	5038	0.1848515647072205	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCG	4236	0.15542501550214094	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4195	0.15392066572981145	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3957	0.14518809875872798	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTT	3816	0.14001460320022896	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG	3046	0.11176218064672364	No Hit
GGGCCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT	2900	0.10640522779891615	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCT	2754	0.10104827495110863	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	34550	45.37424	1
CGGTCTA	445	43.932583	30
CACTTAC	4200	42.33095	36
ACGTAGG	175	42.057144	1
TATACGG	115	42.0	1
ACCCGCA	4275	41.911106	31
GCACTTA	4255	41.783783	35
CCGCACT	4255	41.72973	33
CGCACTT	4290	41.38928	34
GTTTTTT	38815	41.324745	2
CCCGCAC	4365	41.31042	32
AAGCTTA	4825	40.947147	22
TCAACGC	4955	40.940464	15
TAGTAGG	495	40.888885	1
GTTGATC	1870	40.834225	15
GGGCGAT	2355	40.823776	6
AACGCAA	4930	40.821503	17
CTTATGA	4805	40.782516	25
CGCAAGC	4945	40.744186	19
GACGGTC	480	40.729168	28