SRR1043333_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043333_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2650149
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	136273	5.142088237302884	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	16450	0.6207198161310931	No Hit
CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	10413	0.3929213036700956	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	9253	0.34915017985781177	No Hit
CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT	8957	0.33798099654019453	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG	6798	0.2565138790309526	No Hit
GCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	5686	0.21455397413503918	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	5429	0.20485640618697287	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTT	4745	0.1790465366286952	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4087	0.1542177439834515	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCC	3881	0.1464445961340287	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3796	0.14323722930295615	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCT	3531	0.13323779153549478	No Hit
GGGCCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	2968	0.1119937029955674	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT	2961	0.11172956690359674	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGATA	25	3.8921888E-5	45.000004	37
CGTTTTT	33465	0.0	44.408337	1
CACTTAC	4030	0.0	41.59429	36
CGCACTT	4050	0.0	41.5	34
GCACTTA	4045	0.0	41.495674	35
ACCCGCA	4120	0.0	41.286407	31
CGGTCTA	395	0.0	41.01266	30
CCGCACT	4105	0.0	40.943974	33
CATGCGG	425	0.0	40.764706	1
TCAACGC	4730	0.0	40.671246	15
CCCGCAC	4215	0.0	40.622776	32
TCGGCGT	1480	0.0	40.591217	4
AAGCTTA	4535	0.0	40.53473	22
CAACGCA	4685	0.0	40.53362	16
CTTATGA	4490	0.0	40.489975	25
GCTTATG	4525	0.0	40.47514	24
ATCAACG	4755	0.0	40.457413	14
AGCTTAT	4545	0.0	40.34654	23
CGCAAGC	4710	0.0	40.318474	19
AACGCAA	4700	0.0	40.30851	17