SRR1043331_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043331_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1130332
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	75258	6.658043831369899	No Hit
CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT	7863	0.6956363263182852	No Hit
CCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	7784	0.6886472293096187	No Hit
GCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	6500	0.5750522855231914	No Hit
CGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	4056	0.35883262616647144	No Hit
TCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	3020	0.26717813881231356	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCC	2856	0.2526691273006515	No Hit
ACCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	2427	0.21471567645612086	No Hit
GCCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	2296	0.20312616116326884	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTC	2272	0.20100289118595246	No Hit
AGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	1798	0.15906830913395356	No Hit
TCCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	1634	0.1445592976222915	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTT	1613	0.14270143639213967	No Hit
ACTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	1559	0.13792407894317776	No Hit
TGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCTT	1540	0.13624315687780228	Illumina Single End Adapter 1 (95% over 21bp)
CGTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCT	1488	0.13164273859361675	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTC	1412	0.12491905033211481	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCT	1403	0.12412282409062117	No Hit
TGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	1306	0.11554127459896739	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGC	1151	0.10182848932879897	No Hit
GGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	1141	0.10094379350491713	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTCGG	40	6.8157533E-9	45.000004	1
GTACCGG	30	2.1654705E-6	45.000004	1
ATCTACG	20	7.033235E-4	45.000004	40
CGACGCG	20	7.033235E-4	45.000004	37
CGGTTAG	30	2.1654705E-6	45.000004	30
CTCCCGT	30	2.1654705E-6	45.000004	35
CCGTGGA	30	2.1654705E-6	45.000004	38
ATACTCG	30	2.1654705E-6	45.000004	43
CCGTACG	20	7.033235E-4	45.000004	13
TACGCGA	20	7.033235E-4	45.000004	1
TGATTCG	30	2.1654705E-6	45.000004	14
ACTACGG	75	0.0	45.000004	1
TCGTCGA	20	7.033235E-4	45.000004	25
GCTAGTA	20	7.033235E-4	45.000004	8
GCGATCG	20	7.033235E-4	45.000004	8
TTCGGCA	30	2.1654705E-6	45.000004	17
TTACGCT	20	7.033235E-4	45.000004	2
CGTCGAC	20	7.033235E-4	45.000004	26
CCGGTTA	30	2.1654705E-6	45.000004	29
ACGTAGG	75	0.0	45.000004	1

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content