##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043331_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1130332 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.10027761754954 33.0 31.0 34.0 30.0 34.0 2 32.39872090677783 34.0 31.0 34.0 30.0 34.0 3 32.46253401655443 34.0 31.0 34.0 31.0 34.0 4 36.05928612124579 37.0 35.0 37.0 35.0 37.0 5 36.00393866580792 37.0 35.0 37.0 35.0 37.0 6 36.263848143731224 37.0 37.0 37.0 35.0 37.0 7 36.19641220455583 37.0 37.0 37.0 35.0 37.0 8 36.09149258801839 37.0 37.0 37.0 35.0 37.0 9 37.61672234352385 39.0 37.0 39.0 35.0 39.0 10 37.45727980805639 39.0 37.0 39.0 35.0 39.0 11 37.230796792446824 39.0 37.0 39.0 34.0 39.0 12 37.255768216771706 39.0 37.0 39.0 34.0 39.0 13 37.2608242534052 39.0 37.0 39.0 34.0 39.0 14 38.650195694716245 40.0 38.0 41.0 34.0 41.0 15 38.763587158463174 40.0 38.0 41.0 35.0 41.0 16 38.80660991637855 40.0 38.0 41.0 35.0 41.0 17 38.762300810735255 40.0 38.0 41.0 35.0 41.0 18 38.512239766723404 40.0 38.0 41.0 35.0 41.0 19 38.24077793073186 40.0 37.0 41.0 34.0 41.0 20 37.9569427389475 40.0 35.0 41.0 34.0 41.0 21 37.88152949752816 40.0 35.0 41.0 34.0 41.0 22 37.86039057551233 40.0 35.0 41.0 34.0 41.0 23 37.81671933555805 40.0 35.0 41.0 34.0 41.0 24 37.73463548762665 40.0 35.0 41.0 34.0 41.0 25 37.71446176875467 39.0 35.0 41.0 34.0 41.0 26 37.704085171436354 40.0 35.0 41.0 34.0 41.0 27 37.704993754047486 40.0 35.0 41.0 34.0 41.0 28 37.654567861477865 40.0 35.0 41.0 34.0 41.0 29 37.64219273629341 40.0 35.0 41.0 34.0 41.0 30 37.52305694256201 40.0 35.0 41.0 33.0 41.0 31 37.40530658249081 40.0 35.0 41.0 33.0 41.0 32 37.21102207139141 40.0 35.0 41.0 33.0 41.0 33 36.98430903486763 40.0 35.0 41.0 33.0 41.0 34 36.70132138168255 40.0 35.0 41.0 32.0 41.0 35 36.569141632723834 40.0 35.0 41.0 31.0 41.0 36 36.50250103509411 40.0 35.0 41.0 31.0 41.0 37 36.32504697734825 39.0 35.0 41.0 30.0 41.0 38 36.262314965868434 39.0 35.0 41.0 30.0 41.0 39 36.18678671399199 39.0 35.0 41.0 30.0 41.0 40 36.10620861835284 39.0 35.0 41.0 30.0 41.0 41 36.05161580845274 39.0 35.0 41.0 30.0 41.0 42 35.98931552853498 39.0 35.0 41.0 30.0 41.0 43 35.87915231984939 39.0 35.0 41.0 30.0 41.0 44 35.79442853957952 38.0 35.0 40.0 29.0 41.0 45 35.75208345866524 38.0 35.0 40.0 29.0 41.0 46 35.671730960461176 38.0 35.0 40.0 28.0 41.0 47 35.525705721858714 38.0 35.0 40.0 27.0 41.0 48 35.5161961264478 38.0 35.0 40.0 27.0 41.0 49 35.45434792609605 38.0 35.0 40.0 27.0 41.0 50 35.3482277773256 38.0 35.0 40.0 27.0 41.0 51 34.925882837962654 38.0 35.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 2.0 14 5.0 15 8.0 16 35.0 17 78.0 18 182.0 19 367.0 20 625.0 21 1152.0 22 1915.0 23 2913.0 24 5310.0 25 9637.0 26 14946.0 27 17535.0 28 17431.0 29 16735.0 30 18279.0 31 21069.0 32 26063.0 33 34391.0 34 60635.0 35 101842.0 36 115456.0 37 89364.0 38 154398.0 39 419839.0 40 118.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.251373932614488 19.28672283895351 25.953702098144614 27.508201130287386 2 33.62587275243026 19.275929549902152 26.11170877228991 20.986488925377678 3 20.888199219344404 21.363369346351337 38.56893372920523 19.17949770509903 4 22.371126359335133 24.084251352699916 35.97412087775981 17.570501410205143 5 19.689878725896463 28.913894324853228 32.15948942434612 19.23673752490419 6 71.51544855847662 1.655531295230074 22.355378773670036 4.4736413726232644 7 72.14110544512586 1.4739917121695219 18.632490277192897 7.752412565511725 8 59.4782771787404 3.3236252711592704 27.260132421270917 9.937965128829406 9 32.605199180417785 17.9242028005931 30.651790801286698 18.81880721770241 10 25.303981485085796 19.572479590067342 42.76221499524034 12.361323929606522 11 22.485340590198277 15.873920228746952 41.46976286613137 20.170976314923404 12 18.78616194180117 18.950626895460804 43.317007746396634 18.946203416341394 13 13.026349780418498 22.20869620607043 43.394949448480624 21.370004565030452 14 11.723546710170108 22.485694468527832 44.163219301939606 21.62753951936245 15 12.893026119759504 18.449358241649357 47.82939879610592 20.82821684248522 16 13.351829374024623 24.946298963490374 40.00116779848752 21.700703863997482 17 15.221987876128429 22.140397688466752 41.20408871021965 21.433525725185167 18 16.45773100292657 29.093929925013185 39.24307194700318 15.205267125057063 19 15.98645353754472 23.700912652211915 36.63551947569387 23.677114334549497 20 13.352714069848503 29.991896186253243 35.16648206013808 21.488907683760168 21 13.873888379697291 24.094602293839333 37.18571180856598 24.8457975178974 22 12.507387210129414 26.86847758003843 32.90502259513134 27.719112614700812 23 12.188896713531953 23.50105986559701 42.89686569963515 21.413177721235886 24 17.070117452217577 21.84968664073918 38.556459518088495 22.52373638895475 25 13.19718454401008 25.115275865851807 38.36103021059299 23.326509379545122 26 14.944104917847145 21.743611611455748 36.73531316462773 26.57697030606937 27 19.887077425039724 22.89283148667825 37.02089297657679 20.199198111705233 28 14.792379584051412 23.280593666285657 34.0673359685473 27.85969078111564 29 15.927267386927028 22.07378009292845 33.4301780361876 28.568774483956926 30 18.499166616533902 25.236921541635553 31.743328508792107 24.520583333038434 31 16.107656865416534 20.223881125191536 30.60437110512664 33.0640909042653 32 13.736406648666055 22.34201986672942 33.9954101980657 29.92616328653882 33 12.687511279871755 21.577554205313128 35.58432389775747 30.150610617057644 34 13.081554799828723 19.949802358952944 35.17249799174048 31.79614484947785 35 14.222016186394793 19.169235233542004 37.858876860957665 28.749871719105535 36 18.057437991669705 19.75870806099447 36.70010227083724 25.483751676498585 37 14.333930208115845 19.270002087882144 38.88043512879402 27.515632575207995 38 16.567079406758367 19.082535042801585 32.78222681477654 31.568158735663506 39 23.31987416086601 16.759854626782218 34.960878750667945 24.959392461683823 40 17.188312814288192 16.863275568594005 38.646698492124436 27.301713124993366 41 18.980883492637563 21.265875866559558 30.64789813966162 29.10534250114126 42 19.289023048095604 17.386750087584886 37.26533443271534 26.058892431604164 43 22.0142400639812 19.65475630168835 35.6957071019842 22.63529653234625 44 14.87580640024347 22.05272433232006 37.357254328816666 25.714214938619804 45 17.008808031622568 19.658737432895823 36.182289805119204 27.15016473036241 46 22.048831670694984 17.534494290173154 33.954979598914306 26.461694440217563 47 16.44525679180984 16.18781030706023 38.854513541154276 28.512419359975656 48 17.98082333332154 14.35905556951409 34.30823864139032 33.35188245577406 49 19.17949770509903 14.616767463010868 39.763892378522414 26.439842453367685 50 17.76938103141378 14.06692900846831 40.37371320992416 27.789976750193752 51 15.727591539476899 14.004115604972696 38.260351825835244 32.00794102971516 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 424.0 1 1865.0 2 3306.0 3 43283.5 4 83261.0 5 46019.5 6 8778.0 7 8031.5 8 7285.0 9 7519.5 10 7754.0 11 7921.5 12 8089.0 13 7775.0 14 7461.0 15 6813.0 16 6165.0 17 5585.0 18 5005.0 19 4593.0 20 4181.0 21 3809.0 22 3437.0 23 3488.5 24 3540.0 25 3582.5 26 4414.5 27 5204.0 28 5291.0 29 5378.0 30 6260.5 31 7143.0 32 8643.0 33 10143.0 34 12011.5 35 13880.0 36 15912.5 37 17945.0 38 20443.0 39 22941.0 40 26490.0 41 30039.0 42 35976.0 43 41913.0 44 47741.0 45 53569.0 46 63174.0 47 72779.0 48 98792.5 49 124806.0 50 156059.0 51 187312.0 52 180263.5 53 173215.0 54 134930.5 55 96646.0 56 72940.5 57 49235.0 58 37910.5 59 26586.0 60 20486.5 61 14387.0 62 11642.5 63 8898.0 64 7347.0 65 5796.0 66 4496.0 67 3196.0 68 2630.5 69 2065.0 70 1804.5 71 1544.0 72 1458.5 73 1373.0 74 1227.5 75 756.5 76 431.0 77 347.0 78 263.0 79 199.0 80 135.0 81 95.0 82 55.0 83 45.5 84 36.0 85 21.0 86 6.0 87 7.0 88 8.0 89 8.0 90 8.0 91 5.0 92 2.0 93 1.0 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1130332.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.512084244201898 #Duplication Level Percentage of deduplicated Percentage of total 1 72.53101117794122 22.13072323378492 2 12.209057082210677 7.45047556469364 3 4.883376948111582 4.4700602651092245 4 2.4632624768755544 3.0063708884003337 5 1.494813932382813 2.2804944317135556 6 0.9045190089668446 1.6559256121247024 7 0.6717640249421919 1.4347844364882214 8 0.4646442032030211 1.1341810457368515 9 0.37370158087554106 1.0262172706079342 >10 3.4271456703114738 22.27888472208683 >50 0.35403980946986086 7.292392658261153 >100 0.20540103477788124 11.788878900694929 >500 0.010533386398751962 2.2303067247414163 >1k 0.00555928726600798 3.1243220774577942 >5k 8.777821998959968E-4 1.9772077108657495 >10k+ 2.9259406663199893E-4 6.718774457232788 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 75258 6.658043831369899 No Hit CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT 7863 0.6956363263182852 No Hit CCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC 7784 0.6886472293096187 No Hit GCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC 6500 0.5750522855231914 No Hit CGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG 4056 0.35883262616647144 No Hit TCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC 3020 0.26717813881231356 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCC 2856 0.2526691273006515 No Hit ACCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG 2427 0.21471567645612086 No Hit GCCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG 2296 0.20312616116326884 No Hit CGTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTC 2272 0.20100289118595246 No Hit AGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG 1798 0.15906830913395356 No Hit TCCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG 1634 0.1445592976222915 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTT 1613 0.14270143639213967 No Hit ACTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC 1559 0.13792407894317776 No Hit TGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCTT 1540 0.13624315687780228 Illumina Single End Adapter 1 (95% over 21bp) CGTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCT 1488 0.13164273859361675 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTC 1412 0.12491905033211481 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCT 1403 0.12412282409062117 No Hit TGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG 1306 0.11554127459896739 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGC 1151 0.10182848932879897 No Hit GGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG 1141 0.10094379350491713 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.715276573608462 0.0 2 0.0 0.0 0.0 2.430701776115336 0.0 3 8.846958238818329E-5 0.0 0.0 4.120559269312025 0.0 4 8.846958238818329E-5 0.0 0.0 5.166092793975575 0.0 5 8.846958238818329E-5 0.0 0.0 10.473029163113138 0.0 6 8.846958238818329E-5 0.0 0.0 12.010365096272599 0.0 7 8.846958238818329E-5 0.0 0.0 16.564425319286723 0.0 8 8.846958238818329E-5 0.0 0.0 22.144644228421384 0.0 9 8.846958238818329E-5 0.0 0.0 26.392865105119558 0.0 10 8.846958238818329E-5 0.0 0.0 28.969099344263455 0.0 11 8.846958238818329E-5 0.0 0.0 31.193136175919996 0.0 12 8.846958238818329E-5 0.0 0.0 32.73586875360513 0.0 13 8.846958238818329E-5 0.0 0.0 33.38912814995948 0.0 14 1.7693916477636658E-4 0.0 0.0 33.859343980352676 0.0 15 1.7693916477636658E-4 0.0 0.0 35.32723129133741 0.0 16 1.7693916477636658E-4 0.0 0.0 37.03124391771621 0.0 17 1.7693916477636658E-4 0.0 0.0 38.892290052834035 0.0 18 1.7693916477636658E-4 0.0 0.0 39.89818920458768 0.0 19 1.7693916477636658E-4 0.0 0.0 40.99087701666413 0.0 20 1.7693916477636658E-4 0.0 0.0 42.17955432563176 0.0 21 1.7693916477636658E-4 0.0 0.0 43.359915493854906 0.0 22 1.7693916477636658E-4 0.0 0.0 44.449241461800604 0.0 23 1.7693916477636658E-4 0.0 0.0 45.27890920543699 0.0 24 5.308174943290997E-4 0.0 0.0 45.99055852616753 0.0 25 5.308174943290997E-4 0.0 0.0 46.668058588096244 0.0 26 5.308174943290997E-4 0.0 0.0 47.37324962931245 0.0 27 5.308174943290997E-4 0.0 0.0 48.03137485269814 0.0 28 5.308174943290997E-4 0.0 0.0 48.681183935339355 0.0 29 5.308174943290997E-4 0.0 0.0 49.445915005502805 0.0 30 5.308174943290997E-4 0.0 0.0 50.12713078989182 0.0 31 5.308174943290997E-4 0.0 0.0 50.73394365549237 0.0 32 5.308174943290997E-4 0.0 0.0 51.32801690122902 0.0 33 5.308174943290997E-4 0.0 0.0 51.9143932932979 0.0 34 5.308174943290997E-4 0.0 0.0 52.555532356865065 0.0 35 5.308174943290997E-4 0.0 0.0 53.104663054748514 0.0 36 5.308174943290997E-4 0.0 0.0 53.60814344811967 0.0 37 5.308174943290997E-4 0.0 0.0 54.13135255836338 0.0 38 5.308174943290997E-4 0.0 0.0 54.669336088865926 0.0 39 5.308174943290997E-4 0.0 0.0 55.216608925519225 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGTCGG 40 6.8157533E-9 45.000004 1 GTACCGG 30 2.1654705E-6 45.000004 1 ATCTACG 20 7.033235E-4 45.000004 40 CGACGCG 20 7.033235E-4 45.000004 37 CGGTTAG 30 2.1654705E-6 45.000004 30 CTCCCGT 30 2.1654705E-6 45.000004 35 CCGTGGA 30 2.1654705E-6 45.000004 38 ATACTCG 30 2.1654705E-6 45.000004 43 CCGTACG 20 7.033235E-4 45.000004 13 TACGCGA 20 7.033235E-4 45.000004 1 TGATTCG 30 2.1654705E-6 45.000004 14 ACTACGG 75 0.0 45.000004 1 TCGTCGA 20 7.033235E-4 45.000004 25 GCTAGTA 20 7.033235E-4 45.000004 8 GCGATCG 20 7.033235E-4 45.000004 8 TTCGGCA 30 2.1654705E-6 45.000004 17 TTACGCT 20 7.033235E-4 45.000004 2 CGTCGAC 20 7.033235E-4 45.000004 26 CCGGTTA 30 2.1654705E-6 45.000004 29 ACGTAGG 75 0.0 45.000004 1 >>END_MODULE