SRR1043329_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043329_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2796340
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	114736	4.103077594283957	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	16525	0.5909510288448472	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	10180	0.3640472903867198	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	8989	0.32145590307330296	No Hit
CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT	7710	0.2757175450767789	TruSeq Adapter, Index 27 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	5869	0.20988148794495662	No Hit
CGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTG	5153	0.18427659011422073	TruSeq Adapter, Index 27 (95% over 21bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4102	0.14669174706938357	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3733	0.1334959268186272	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC	3442	0.12308946694607951	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3319	0.1186908601958274	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCC	3134	0.1120750695552043	No Hit
GGGCCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC	2931	0.10481558036576381	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTATA	20	7.035024E-4	45.0	30
ACGATAA	20	7.035024E-4	45.0	21
CGTTTTT	29085	0.0	44.21867	1
ACTACGG	150	0.0	43.5	1
GCATAGG	540	0.0	43.333336	1
ATAACGG	130	0.0	43.26923	1
TATGCGG	575	0.0	41.869564	1
CGCACTT	4340	0.0	41.370968	34
GCACTTA	4365	0.0	41.13402	35
CACTTAC	4370	0.0	40.932495	36
CCGCACT	4395	0.0	40.904438	33
CTTACTG	4405	0.0	40.45403	38
ACCCGCA	4500	0.0	40.4	31
CCCGCAC	4545	0.0	40.297028	32
ATACCGG	95	0.0	40.26316	1
ACTTACT	4425	0.0	40.118645	37
CGACGGT	345	0.0	39.782608	27
ACGACCA	380	0.0	39.671055	27
GTTTTTT	33325	0.0	39.59865	2
AAACACG	365	0.0	39.452057	39