##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043329_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2796340 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.3555261520416 33.0 31.0 34.0 31.0 34.0 2 32.642010985788566 34.0 31.0 34.0 31.0 34.0 3 32.74244762797085 34.0 31.0 34.0 31.0 34.0 4 36.220572605620205 37.0 37.0 37.0 35.0 37.0 5 36.206987347747415 37.0 37.0 37.0 35.0 37.0 6 36.35396053412675 37.0 37.0 37.0 35.0 37.0 7 36.30652209674074 37.0 37.0 37.0 35.0 37.0 8 36.21295300285373 37.0 37.0 37.0 35.0 37.0 9 37.82089230923278 39.0 38.0 39.0 35.0 39.0 10 37.59316177574973 39.0 37.0 39.0 35.0 39.0 11 37.276079089095035 39.0 37.0 39.0 35.0 39.0 12 37.28555361651301 39.0 37.0 39.0 35.0 39.0 13 37.28570381284107 39.0 37.0 39.0 35.0 39.0 14 38.56778288763169 40.0 37.0 41.0 35.0 41.0 15 38.62891958774684 40.0 38.0 41.0 35.0 41.0 16 38.541343327349324 40.0 38.0 41.0 34.0 41.0 17 38.46774748421151 40.0 37.0 41.0 34.0 41.0 18 38.31291223527897 40.0 37.0 41.0 34.0 41.0 19 38.133048556327196 40.0 37.0 41.0 34.0 41.0 20 37.85399557993663 40.0 35.0 41.0 34.0 41.0 21 37.79516761194991 40.0 35.0 41.0 34.0 41.0 22 37.770310834877016 40.0 35.0 41.0 34.0 41.0 23 37.7558254718668 40.0 35.0 41.0 34.0 41.0 24 37.68174864286889 40.0 35.0 41.0 34.0 41.0 25 37.64605162462362 39.0 35.0 41.0 34.0 41.0 26 37.61620225008404 39.0 35.0 41.0 34.0 41.0 27 37.58956993784733 39.0 35.0 41.0 34.0 41.0 28 37.495247716658206 39.0 35.0 41.0 34.0 41.0 29 37.430641838975234 39.0 35.0 41.0 34.0 41.0 30 37.29435226045474 39.0 35.0 41.0 33.0 41.0 31 37.13846885571855 39.0 35.0 41.0 33.0 41.0 32 36.93112640093837 39.0 35.0 41.0 33.0 41.0 33 36.449927405108106 39.0 35.0 41.0 31.0 41.0 34 36.22021749858744 39.0 35.0 41.0 31.0 41.0 35 35.99511683128661 38.0 35.0 41.0 30.0 41.0 36 35.91877275295565 38.0 35.0 41.0 30.0 41.0 37 35.79422173269345 38.0 35.0 41.0 30.0 41.0 38 35.73668581073832 38.0 35.0 41.0 30.0 41.0 39 35.69949791513192 38.0 35.0 40.0 30.0 41.0 40 35.62128639578878 38.0 35.0 40.0 29.0 41.0 41 35.55556691961635 38.0 35.0 40.0 29.0 41.0 42 35.45289700107998 37.0 35.0 40.0 29.0 41.0 43 35.29408083423332 37.0 35.0 40.0 28.0 41.0 44 35.15511454258066 37.0 35.0 40.0 28.0 41.0 45 35.053613294520694 36.0 35.0 40.0 27.0 41.0 46 34.954542366092824 36.0 35.0 40.0 27.0 41.0 47 34.79666814478926 36.0 35.0 40.0 26.0 41.0 48 34.71220917341954 36.0 35.0 40.0 26.0 41.0 49 34.6223463527325 35.0 34.0 40.0 27.0 41.0 50 34.519925688578645 35.0 34.0 39.0 27.0 41.0 51 34.07819936059278 35.0 34.0 39.0 25.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 10.0 14 23.0 15 62.0 16 125.0 17 263.0 18 546.0 19 972.0 20 1801.0 21 2964.0 22 4690.0 23 7230.0 24 11755.0 25 20663.0 26 33522.0 27 43835.0 28 47978.0 29 48725.0 30 51058.0 31 57268.0 32 66817.0 33 87401.0 34 204811.0 35 287522.0 36 254480.0 37 278555.0 38 441727.0 39 841348.0 40 187.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.664883383279573 17.49111338392327 23.99833353597917 28.845669696817982 2 34.566719354584926 19.901192272756532 24.17924858922735 21.3528397834312 3 26.08842272398921 20.94909774920074 33.03432343706416 19.928156089745883 4 23.489024939742663 23.53912614345895 30.918235979888 22.05361293691039 5 21.996574093279072 31.623014368782048 27.910196900233874 18.470214637705002 6 79.08480370770364 2.1264581560182236 15.943340223291875 2.8453979129862605 7 79.06388350486708 1.9041675904932875 14.519979687734683 4.511969216904954 8 69.84690702847294 3.3371478432522514 19.827202700673023 6.988742427601793 9 43.86515945843495 14.438444538217812 24.04922148236624 17.647174520980997 10 29.755323029388414 15.08818670118798 33.85807877439797 21.29841149502564 11 25.876610140397805 12.555662043957458 38.853751689708695 22.713976125936046 12 22.085905147442727 13.809086162626864 41.05891987383509 23.046088816095324 13 17.9827202700673 16.601700794610096 43.2566140025891 22.1589649327335 14 18.152835492107542 16.84408905927033 42.87711794703076 22.125957501591365 15 21.846377765221682 14.491728473647697 41.42153672300221 22.240357038128412 16 21.49788652309805 18.232081935673058 37.36444781392821 22.905583727300684 17 21.50743471823884 19.476386991567548 37.70947023609432 21.30670805409929 18 22.650428774755575 24.447492078931745 33.72193653132309 19.18014261498959 19 23.498358568700517 21.297875079568293 32.23813985423804 22.96562649749315 20 22.686154044214938 24.925259446276204 33.42819542687942 18.96039108262944 21 20.858407775878472 19.715664046575164 34.49022651036712 24.93570166717924 22 22.45199081656737 20.924279594040783 32.147914774312135 24.475814815079712 23 22.588526430977634 19.025583441212444 35.11146713203688 23.274422995773048 24 25.072523369833426 17.78961070542209 32.386512369740444 24.75135355500404 25 19.54483360392513 18.68867877296752 35.18352560847393 26.582962014633416 26 19.533032463863478 18.14357338521067 35.00261055522576 27.320783595700092 27 23.13831651372866 20.078209373681315 34.28406416959311 22.499409942996916 28 24.245406495633578 21.69957873506083 30.449516153257473 23.60549861604812 29 25.539955799366314 18.974659733794887 32.91663388572205 22.568750581116745 30 29.216046689601406 18.362716980052497 29.900405530085756 22.52083080026034 31 29.956443064863358 19.60376778217241 28.951128975732566 21.488660177231665 32 31.719676434196124 17.95901070685253 28.013689322471517 22.307623536479827 33 25.962472374603944 20.630717294749566 32.93190384574122 20.47490648490527 34 26.32773554002732 22.160037763648198 31.502714262214184 20.009512434110302 35 26.028773325132136 26.423753906892582 29.428109600406245 18.119363167569034 36 26.04733329995637 22.370598711172462 29.892895713682886 21.68917227518828 37 23.479154895327465 26.058240414255778 31.828497249976756 18.634107440440005 38 21.88653740246179 22.71798136135091 29.740410679674145 25.655070556513156 39 23.60814493230437 20.232232132001116 32.51507327435147 23.644549661343042 40 20.156740596637032 19.746704621040358 34.12914738551106 25.96740739681155 41 21.837473268629708 23.368867877296754 28.82871896836579 25.964939885707743 42 21.712917599433545 18.274852128138924 31.171424075756164 28.840806196671366 43 23.800646559431257 19.14641996323766 32.56338642654327 24.489547050787817 44 23.852750380854975 19.62790647775306 33.10101775892774 23.41832538246422 45 23.723974910061006 21.027557450095482 32.217541500675885 23.030926139167626 46 24.085554689343926 20.111145282762468 31.62337197908695 24.179928048806655 47 21.753041475643162 20.636403298597454 33.655385253581464 23.955169972177917 48 23.101947545720478 18.806582890492574 30.997089052118127 27.094380511668824 49 22.203701981876307 17.574186257751204 34.98380025318809 25.23831150718439 50 21.556284285887983 17.676391282891206 36.22574508107025 24.541579350150556 51 20.197257844182037 16.564938455266525 35.09394422709685 28.143859473454587 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 807.0 1 4536.0 2 8265.0 3 81768.0 4 155271.0 5 89018.5 6 22766.0 7 20218.0 8 17670.0 9 17169.0 10 16668.0 11 16084.0 12 15500.0 13 14552.5 14 13605.0 15 12517.5 16 11430.0 17 10647.0 18 9864.0 19 9059.0 20 8254.0 21 8160.5 22 8067.0 23 7803.5 24 7540.0 25 7952.0 26 9134.5 27 9905.0 28 10410.5 29 10916.0 30 12747.0 31 14578.0 32 17107.0 33 19636.0 34 22262.0 35 24888.0 36 28392.0 37 31896.0 38 34876.0 39 37856.0 40 42920.0 41 47984.0 42 57354.0 43 66724.0 44 82200.5 45 97677.0 46 128527.0 47 159377.0 48 209036.0 49 258695.0 50 277776.5 51 296858.0 52 261310.0 53 225762.0 54 205615.0 55 185468.0 56 174912.5 57 164357.0 58 161644.5 59 158932.0 60 157680.5 61 156429.0 62 149620.5 63 142812.0 64 135860.0 65 128908.0 66 106117.0 67 83326.0 68 69365.0 69 55404.0 70 46943.0 71 38482.0 72 34635.5 73 30789.0 74 25886.0 75 16702.5 76 12422.0 77 9140.0 78 5858.0 79 4344.0 80 2830.0 81 2130.5 82 1431.0 83 1042.0 84 653.0 85 449.0 86 245.0 87 183.5 88 122.0 89 78.0 90 34.0 91 27.0 92 20.0 93 13.0 94 6.0 95 4.5 96 3.0 97 2.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2796340.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.637053970262 #Duplication Level Percentage of deduplicated Percentage of total 1 73.2073771575213 19.5002885636622 2 10.840865859256631 5.775374579547791 3 3.9357590144776777 3.145110758477612 4 2.0005285514615503 2.1315274797732546 5 1.1976486888247897 1.5950916380819717 6 0.788046146547442 1.2594736641984725 7 0.5952957248222133 1.109984704524887 8 0.48194537230819634 1.027008391431315 9 0.4226160442089583 1.0131521740463387 >10 5.769088103745453 35.451457692512676 >50 0.5784497432416909 9.989999961655691 >100 0.16891804655910794 7.971581424472106 >500 0.0072066867911415745 1.2874325562850464 >1k 0.005303033676500403 2.6155037207611698 >5k 5.439008898974773E-4 1.00404889274941 >10k+ 4.0792566742310795E-4 5.122963797820038 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 114736 4.103077594283957 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 16525 0.5909510288448472 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 10180 0.3640472903867198 No Hit CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 8989 0.32145590307330296 No Hit CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT 7710 0.2757175450767789 TruSeq Adapter, Index 27 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 5869 0.20988148794495662 No Hit CGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTG 5153 0.18427659011422073 TruSeq Adapter, Index 27 (95% over 21bp) GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4102 0.14669174706938357 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3733 0.1334959268186272 No Hit CGTTCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC 3442 0.12308946694607951 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3319 0.1186908601958274 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCC 3134 0.1120750695552043 No Hit GGGCCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC 2931 0.10481558036576381 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.286517376284715 0.0 2 0.0 0.0 0.0 0.9735225330253117 0.0 3 0.0 0.0 0.0 1.6290937439653261 0.0 4 0.0 0.0 0.0 2.0658432093379204 0.0 5 0.0 0.0 0.0 4.34593075234056 0.0 6 0.0 0.0 0.0 5.163249104186186 0.0 7 0.0 0.0 0.0 7.533669010206198 0.0 8 0.0 0.0 0.0 10.30990509022508 0.0 9 0.0 0.0 0.0 12.940200404814865 0.0 10 0.0 0.0 0.0 14.429861890900249 0.0 11 0.0 0.0 0.0 15.605470007223728 0.0 12 0.0 0.0 0.0 16.427186965819608 0.0 13 0.0 0.0 0.0 16.849596257965768 0.0 14 0.0 0.0 0.0 17.13021306421966 0.0 15 0.0 0.0 0.0 17.854230887517254 0.0 16 0.0 0.0 0.0 18.620875859158758 0.0 17 0.0 0.0 0.0 19.595363940007296 0.0 18 0.0 0.0 0.0 20.153522103892946 0.0 19 0.0 0.0 0.0 20.794860424697998 0.0 20 0.0 0.0 0.0 21.504037420342303 0.0 21 0.0 0.0 0.0 22.216468669761188 0.0 22 3.57610304898546E-5 0.0 0.0 22.887238318659392 0.0 23 3.57610304898546E-5 0.0 0.0 23.48931102798658 0.0 24 1.0728309146956378E-4 0.0 0.0 23.98442249511862 0.0 25 1.0728309146956378E-4 0.0 0.0 24.45156883640759 0.0 26 1.430441219594184E-4 0.0 0.0 24.898295629286853 0.0 27 1.430441219594184E-4 0.0 0.0 25.369804816295588 0.0 28 1.7880515244927297E-4 0.0 0.0 25.839597473840808 0.0 29 1.7880515244927297E-4 0.0 0.0 26.32566140025891 0.0 30 1.7880515244927297E-4 0.0 0.0 26.782329759614353 0.0 31 1.7880515244927297E-4 0.0 0.0 27.26041897623322 0.0 32 1.7880515244927297E-4 0.0 0.0 27.786749822982898 0.0 33 1.7880515244927297E-4 0.0 0.0 28.29040817640201 0.0 34 1.7880515244927297E-4 0.0 0.0 28.827932225695015 0.0 35 1.7880515244927297E-4 0.0 0.0 29.307308839411515 0.0 36 1.7880515244927297E-4 0.0 0.0 29.813899597330796 0.0 37 1.7880515244927297E-4 0.0 0.0 30.448157234098858 0.0 38 1.7880515244927297E-4 0.0 0.0 31.115815673344443 0.0 39 1.7880515244927297E-4 0.0 0.0 31.85925173619803 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTATA 20 7.035024E-4 45.0 30 ACGATAA 20 7.035024E-4 45.0 21 CGTTTTT 29085 0.0 44.21867 1 ACTACGG 150 0.0 43.5 1 GCATAGG 540 0.0 43.333336 1 ATAACGG 130 0.0 43.26923 1 TATGCGG 575 0.0 41.869564 1 CGCACTT 4340 0.0 41.370968 34 GCACTTA 4365 0.0 41.13402 35 CACTTAC 4370 0.0 40.932495 36 CCGCACT 4395 0.0 40.904438 33 CTTACTG 4405 0.0 40.45403 38 ACCCGCA 4500 0.0 40.4 31 CCCGCAC 4545 0.0 40.297028 32 ATACCGG 95 0.0 40.26316 1 ACTTACT 4425 0.0 40.118645 37 CGACGGT 345 0.0 39.782608 27 ACGACCA 380 0.0 39.671055 27 GTTTTTT 33325 0.0 39.59865 2 AAACACG 365 0.0 39.452057 39 >>END_MODULE