##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043328_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2625822 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.346142274685796 33.0 31.0 34.0 31.0 34.0 2 32.68331135926198 34.0 31.0 34.0 31.0 34.0 3 32.80425443918133 34.0 31.0 34.0 31.0 34.0 4 36.234697172923376 37.0 37.0 37.0 35.0 37.0 5 36.16873992220341 37.0 37.0 37.0 35.0 37.0 6 36.33277807863595 37.0 37.0 37.0 35.0 37.0 7 36.26985949542657 37.0 37.0 37.0 35.0 37.0 8 36.238899666466345 37.0 37.0 37.0 35.0 37.0 9 37.800544743703114 39.0 38.0 39.0 35.0 39.0 10 37.62275356059931 39.0 37.0 39.0 35.0 39.0 11 37.240606560536094 39.0 37.0 39.0 35.0 39.0 12 37.223185349197315 39.0 37.0 39.0 34.0 39.0 13 37.15934248399168 39.0 37.0 39.0 34.0 39.0 14 38.49696475998754 40.0 37.0 41.0 34.0 41.0 15 38.552443006418564 40.0 37.0 41.0 35.0 41.0 16 38.41511572376193 40.0 37.0 41.0 34.0 41.0 17 38.3579945632263 40.0 37.0 41.0 34.0 41.0 18 38.20286257027323 40.0 37.0 41.0 34.0 41.0 19 38.004233341026165 40.0 36.0 41.0 34.0 41.0 20 37.77044102760964 40.0 35.0 41.0 34.0 41.0 21 37.68680816902288 39.0 35.0 41.0 34.0 41.0 22 37.6280288610576 39.0 35.0 41.0 34.0 41.0 23 37.64897734880734 39.0 35.0 41.0 34.0 41.0 24 37.55330521261533 39.0 35.0 41.0 34.0 41.0 25 37.45060137358892 39.0 35.0 41.0 34.0 41.0 26 37.35770931921509 39.0 35.0 41.0 33.0 41.0 27 37.39033567393373 39.0 35.0 41.0 34.0 41.0 28 37.372505447817865 39.0 35.0 41.0 33.0 41.0 29 37.27221304414389 39.0 35.0 41.0 33.0 41.0 30 37.22974405728949 39.0 35.0 41.0 33.0 41.0 31 37.13746209758315 39.0 35.0 41.0 33.0 41.0 32 36.943258530090766 39.0 35.0 41.0 33.0 41.0 33 36.59252873957184 39.0 35.0 41.0 31.0 41.0 34 36.34780841961108 39.0 35.0 41.0 31.0 41.0 35 36.24855607120361 39.0 35.0 41.0 31.0 41.0 36 36.14298532040633 39.0 35.0 41.0 31.0 41.0 37 36.11321026330041 39.0 35.0 41.0 31.0 41.0 38 35.95961569367611 38.0 35.0 41.0 30.0 41.0 39 35.90856767899728 38.0 35.0 41.0 30.0 41.0 40 35.83515904733832 38.0 35.0 41.0 30.0 41.0 41 35.80579643250761 38.0 35.0 41.0 30.0 41.0 42 35.74046146311517 38.0 35.0 41.0 30.0 41.0 43 35.640546465068844 38.0 35.0 41.0 30.0 41.0 44 35.486339896611426 37.0 35.0 40.0 29.0 41.0 45 35.39466308074196 37.0 35.0 40.0 29.0 41.0 46 35.34867481497223 37.0 35.0 40.0 28.0 41.0 47 35.26653139474039 37.0 35.0 40.0 28.0 41.0 48 35.166237086900786 37.0 35.0 40.0 28.0 41.0 49 35.12516956594925 36.0 35.0 40.0 28.0 41.0 50 35.02755441914951 36.0 35.0 40.0 28.0 41.0 51 34.90189967179801 36.0 35.0 40.0 27.0 41.0 52 34.555704461307734 35.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 0.0 11 0.0 12 2.0 13 10.0 14 18.0 15 49.0 16 104.0 17 225.0 18 526.0 19 1034.0 20 1876.0 21 3062.0 22 4929.0 23 7744.0 24 12774.0 25 22100.0 26 33015.0 27 40079.0 28 42470.0 29 43667.0 30 46495.0 31 53053.0 32 63412.0 33 81998.0 34 199813.0 35 266647.0 36 231436.0 37 238347.0 38 362347.0 39 866580.0 40 2006.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.39586156258878 17.346187212994636 24.34788039707185 28.91007082734473 2 34.18304820357206 20.18263233379871 24.534336295453386 21.09998316717584 3 26.561663357226806 20.59126627775988 32.79769154192478 20.049378823088542 4 23.575588901304048 23.86852574165347 31.002710770189296 21.55317458685318 5 22.018857333056086 31.248462386254666 28.231273863955742 18.501406416733506 6 78.50463588164011 2.1529258266554248 16.38043248933096 2.962005802373504 7 78.45516565860137 2.020472065509391 14.818331174009511 4.706031101879716 8 69.09977142395792 3.320255523794073 20.497809828693644 7.082163223554376 9 42.03936900521056 15.034301639638938 25.394866826464245 17.531462528686255 10 30.34634487790871 15.572647346240528 34.19473978053348 19.886267995317276 11 27.139996542035217 13.057968133407366 38.265503145300784 21.53653217925663 12 22.431185358337313 14.127119050720117 41.03701621815949 22.404679372783075 13 17.135891160939316 17.38838352333098 43.034562129496976 22.44116318623273 14 18.390050810755643 17.25288309717871 42.56282413659418 21.79424195547147 15 22.6765561412769 14.336234520085519 41.431330836591364 21.555878502046216 16 21.669328690215863 18.187599921091376 37.65114314679365 22.49192824189911 17 21.819148441897433 18.84678397850273 38.02382644368125 21.31024113591858 18 22.354866399931144 25.196947850996754 33.878838702699575 18.569347046372524 19 22.92802025422896 21.786625292955883 32.47821063270854 22.807143820106617 20 22.83505888822624 25.29939196183138 33.161539510294304 18.70400963964808 21 19.463695558952587 20.366688983487837 35.64396215737396 24.525653300185617 22 20.91436510167102 21.08132234401266 33.73697836334679 24.26733419096953 23 22.707936790841117 19.398306511256287 35.810310066714344 22.083446631188252 24 24.486160905042308 17.746899827939593 32.7417471557478 25.0251921112703 25 18.337076922959746 18.943249009262622 36.26045482138546 26.45921924639218 26 17.800901965175093 17.73079058671913 36.95273327742703 27.515574170678743 27 21.406820416616206 20.517879734422213 35.02004324740977 23.055256601551818 28 22.67072939445248 21.62210538261923 31.352962995968504 24.354202226959785 29 22.815407898936026 18.238707726570954 36.264148902705514 22.6817354717875 30 25.171584364819854 18.074759065922976 32.17731438003033 24.576342189226843 31 28.072771117006408 18.220541986471282 31.378136065582513 22.328550830939797 32 25.00001904165629 17.510364373518083 30.62774247454702 26.86187411027861 33 22.027159495198077 18.023537010505663 36.63176711902025 23.31753637527601 34 21.189821701547174 21.70562208710263 32.6653139474039 24.4392422639463 35 24.13301434750718 22.96244756879941 30.774325144659464 22.130212939033946 36 22.252726955597144 23.142657803918162 31.38255372984155 23.222061510643144 37 24.129244099561966 24.633771824594355 30.680030862716514 20.556953213127166 38 22.92017509183791 22.371089891089344 29.781721685628348 24.9270133314444 39 24.88527402085899 18.65088341860187 34.454049055876595 22.00979350466254 40 19.369629776885105 18.8782407946921 36.63397595114977 25.11815347727302 41 20.963530658209127 22.381753218611163 31.222108733950737 25.432607389228973 42 20.744589694198616 16.79397918061468 33.29205102249886 29.169380102687843 43 22.89511627216163 17.90795415683165 33.622157175924336 25.57477239508238 44 21.04453386406238 19.65700645359815 33.616787428850856 25.681672253488625 45 22.890736691215167 20.198094158705352 32.716536002821215 24.19463314725827 46 22.843284883743074 19.459696811131906 32.88989124167594 24.807127063449084 47 20.223152978381627 19.511680532800778 35.17584207916607 25.08932440965153 48 21.716171164686713 18.283836451975798 32.63389521452711 27.366097168810377 49 22.054389063691293 16.71141455894573 35.54688779361282 25.687308583750156 50 20.3379360824915 17.233917607514904 36.7295269824078 25.6986193275858 51 18.886085957083154 16.164157357200907 36.36895417891997 28.580802506795965 52 17.76830264960839 16.754144035658168 39.40251852562741 26.075034789106038 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 837.0 1 4739.0 2 8641.0 3 74306.0 4 139971.0 5 80179.5 6 20388.0 7 18412.5 8 16437.0 9 16030.5 10 15624.0 11 15110.5 12 14597.0 13 13976.5 14 12546.0 15 11736.0 16 10890.5 17 10045.0 18 9975.5 19 9906.0 20 9141.0 21 8376.0 22 7855.5 23 7335.0 24 7471.5 25 7608.0 26 8644.5 27 9681.0 28 10291.0 29 10901.0 30 12426.0 31 13951.0 32 15866.5 33 17782.0 34 20462.5 35 23143.0 36 25701.5 37 28260.0 38 31007.0 39 36947.5 40 40141.0 41 48201.5 42 56262.0 43 74164.0 44 92066.0 45 115158.5 46 138251.0 47 177986.0 48 217721.0 49 246793.5 50 275866.0 51 263577.5 52 251289.0 53 222436.5 54 193584.0 55 178199.5 56 162815.0 57 152413.0 58 142011.0 59 137410.5 60 132810.0 61 128087.5 62 123365.0 63 121423.0 64 101042.5 65 82604.0 66 68930.5 67 55257.0 68 45495.5 69 35734.0 70 31094.0 71 26454.0 72 26190.0 73 25926.0 74 20482.0 75 15038.0 76 11438.0 77 7838.0 78 6177.0 79 4516.0 80 3547.5 81 2579.0 82 1797.0 83 1015.0 84 727.0 85 439.0 86 310.5 87 182.0 88 150.0 89 103.0 90 88.0 91 60.0 92 32.0 93 20.5 94 9.0 95 5.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2625822.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.85877558184581 #Duplication Level Percentage of deduplicated Percentage of total 1 72.35673199887749 20.15769958592489 2 11.50830285031963 6.412144528699421 3 4.417558343926087 3.692032995694418 4 2.2441825631986365 2.500807135713692 5 1.2933234276022707 1.801520356215763 6 0.810726599932803 1.3551510243456506 7 0.634320955435493 1.2369983601037593 8 0.4903067753428252 1.0927477136427404 9 0.4167009500304377 1.0447900426475916 >10 5.1258551893396245 32.9416255377345 >50 0.5213905909383859 9.535413917852244 >100 0.167681830018682 8.418882687403574 >500 0.007420935659874932 1.4577721710867317 >1k 0.004672440971032365 2.5468995372940313 >5k 4.1227420332638515E-4 0.9277567303607104 >10k+ 4.1227420332638515E-4 4.8777576752802805 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 101847 3.8786711361242308 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 14117 0.5376221236626092 No Hit CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT 11443 0.43578734582922984 Illumina Single End Adapter 1 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCTT 9492 0.3614868029896924 Illumina Single End Adapter 1 (95% over 23bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 8581 0.32679290523119997 No Hit GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT 6160 0.23459320548003632 Illumina Single End Adapter 1 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC 4673 0.17796331967665746 Illumina Single End Adapter 1 (95% over 21bp) GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3534 0.13458642665039747 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3388 0.12902626301401998 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCG 3215 0.12243784993803844 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2988 0.11379293798284881 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA 2741 0.1043863597761006 No Hit TCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT 2654 0.10107311158182085 Illumina Single End Adapter 1 (95% over 22bp) AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2648 0.10084461170635328 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT 2640 0.10053994520572987 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3718073806983109 0.0 2 0.0 0.0 0.0 1.2206082514351697 0.0 3 0.0 0.0 0.0 1.9245021178130124 0.0 4 0.0 0.0 0.0 2.393840862023397 0.0 5 0.0 0.0 0.0 4.8468631917928935 0.0 6 0.0 0.0 0.0 5.578215126539423 0.0 7 0.0 0.0 0.0 7.930469011227722 0.0 8 0.0 0.0 0.0 10.611419966776118 0.0 9 0.0 0.0 0.0 13.192059476994253 0.0 10 0.0 0.0 0.0 14.650650348728893 0.0 11 3.808331257792798E-5 0.0 0.0 15.917148991820467 0.0 12 3.808331257792798E-5 0.0 0.0 16.862452976629793 0.0 13 3.808331257792798E-5 0.0 0.0 17.342226548486533 0.0 14 3.808331257792798E-5 0.0 0.0 17.650015880741346 0.0 15 3.808331257792798E-5 0.0 0.0 18.479927428439552 0.0 16 3.808331257792798E-5 0.0 0.0 19.39434584674818 0.0 17 3.808331257792798E-5 0.0 0.0 20.48413791947817 0.0 18 3.808331257792798E-5 0.0 0.0 21.155927553352818 0.0 19 3.808331257792798E-5 0.0 0.0 21.92597213367852 0.0 20 3.808331257792798E-5 0.0 0.0 22.740117189969464 0.0 21 3.808331257792798E-5 0.0 0.0 23.524633429074782 0.0 22 1.904165628896399E-4 0.0 0.0 24.28946059557731 0.0 23 1.904165628896399E-4 0.0 0.0 24.974350888978766 0.0 24 3.808331257792798E-4 0.0 0.0 25.553102990225536 0.0 25 3.808331257792798E-4 0.0 0.0 26.106377355357676 0.0 26 3.808331257792798E-4 0.0 0.0 26.65580530591944 0.0 27 3.808331257792798E-4 0.0 0.0 27.234328907290745 0.0 28 4.569997509351357E-4 0.0 0.0 27.831856081638435 0.0 29 4.569997509351357E-4 0.0 0.0 28.417082346023456 0.0 30 4.569997509351357E-4 0.0 0.0 28.962397298826804 0.0 31 4.569997509351357E-4 0.0 0.0 29.508055001443356 0.0 32 4.569997509351357E-4 0.0 0.0 30.113122671681477 0.0 33 4.569997509351357E-4 0.0 0.0 30.69941526881868 0.0 34 4.569997509351357E-4 0.0 0.0 31.30996693606802 0.0 35 4.569997509351357E-4 0.0 0.0 31.85215905723998 0.0 36 4.569997509351357E-4 0.0 0.0 32.43746148825016 0.0 37 4.569997509351357E-4 0.0 0.0 33.145811102199616 0.0 38 5.712496886689197E-4 0.0 0.0 33.947426748652425 0.0 39 5.712496886689197E-4 0.0 0.0 34.80133078327472 0.0 40 5.712496886689197E-4 0.0 0.0 35.61947458738635 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATCGA 25 3.4183635E-5 46.0 1 AATCGGT 25 3.4183635E-5 46.0 46 CGTTTTT 26160 0.0 45.2263 1 ACGTAGG 200 0.0 44.850002 1 CTATCGG 85 0.0 43.294117 1 AATGCGG 380 0.0 42.973682 1 TCACGAC 330 0.0 42.515152 24 ACGGGTA 280 0.0 41.89286 4 CGGTCTA 320 0.0 41.687504 30 CTTACGG 210 0.0 41.619045 1 CACTTAC 3810 0.0 41.23097 36 TAGGGTA 765 0.0 41.18954 4 CCGCACT 3850 0.0 41.16104 33 ACCCGCA 3935 0.0 41.031765 31 ACGGGAT 365 0.0 40.958904 4 TAGTAGG 730 0.0 40.958904 1 CGGGTAC 490 0.0 40.836735 5 ACTTACT 3785 0.0 40.77411 37 CGCACTT 3870 0.0 40.770027 34 TATACGG 175 0.0 40.74286 1 >>END_MODULE