SRR1043327_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043327_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2564185
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	96392	3.7591671427763593	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13545	0.5282380171477488	No Hit
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	10909	0.42543732219009156	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT	9372	0.36549624929558516	Illumina Single End Adapter 1 (95% over 22bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	7432	0.28983868168638377	No Hit
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	6175	0.24081725772516416	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	4609	0.1797452211911387	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3407	0.1328687282703861	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3218	0.1254979652404175	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCC	3140	0.12245606303757334	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2825	0.1101714579876257	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	2704	0.10545260969859818	No Hit
TCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	2659	0.10369766612003423	Illumina Single End Adapter 1 (95% over 21bp)
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2583	0.10073376140957069	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	2570	0.10022677770909665	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCTACG	20	7.0349127E-4	45.0	39
ACGTAGG	310	0.0	45.0	1
CGCGTAT	20	7.0349127E-4	45.0	30
CGTTTTT	24905	0.0	44.241116	1
TCACGAC	320	0.0	42.890625	24
AATGCGG	390	0.0	42.115387	1
ACGGGTA	205	0.0	41.707314	4
ACTACGG	190	0.0	41.447372	1
CTTACGG	180	0.0	41.25	1
TATACGG	110	0.0	40.909092	1
CGCACTT	3615	0.0	40.829872	34
CACTTAC	3665	0.0	40.518417	36
GCGATAT	50	1.0822987E-9	40.500004	8
CCGCACT	3685	0.0	40.23745	33
GCACTTA	3680	0.0	40.23098	35
CATGCGG	560	0.0	40.178574	1
ACCCGCA	3730	0.0	40.11394	31
ACTTACT	3685	0.0	40.054276	37
ACCGGTA	135	0.0	40.0	41
CGGTCTA	310	0.0	39.919353	30