##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043326_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1626286 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.30108849242999 33.0 31.0 34.0 31.0 34.0 2 32.637096427073715 34.0 31.0 34.0 31.0 34.0 3 32.77815587172244 34.0 31.0 34.0 31.0 34.0 4 36.212543796109664 37.0 37.0 37.0 35.0 37.0 5 36.14782393748701 37.0 37.0 37.0 35.0 37.0 6 36.28902542357248 37.0 37.0 37.0 35.0 37.0 7 36.215387084436564 37.0 37.0 37.0 35.0 37.0 8 36.19857392857099 37.0 37.0 37.0 35.0 37.0 9 37.78570681909578 39.0 38.0 39.0 35.0 39.0 10 37.640956756683636 39.0 37.0 39.0 35.0 39.0 11 37.408970500883605 39.0 37.0 39.0 35.0 39.0 12 37.42192455693525 39.0 37.0 39.0 35.0 39.0 13 37.43106317093057 39.0 37.0 39.0 35.0 39.0 14 38.81481609015881 40.0 38.0 41.0 35.0 41.0 15 38.87835042544792 41.0 38.0 41.0 35.0 41.0 16 38.819911134941826 41.0 38.0 41.0 35.0 41.0 17 38.807209187067954 41.0 38.0 41.0 35.0 41.0 18 38.5965217680039 40.0 38.0 41.0 35.0 41.0 19 38.37445074236635 40.0 37.0 41.0 35.0 41.0 20 38.09521387996945 40.0 35.0 41.0 34.0 41.0 21 38.04384960578889 40.0 35.0 41.0 34.0 41.0 22 37.98935119653001 40.0 35.0 41.0 34.0 41.0 23 37.9894544993931 40.0 35.0 41.0 34.0 41.0 24 37.89658645527293 40.0 35.0 41.0 34.0 41.0 25 37.79434982530748 40.0 35.0 41.0 34.0 41.0 26 37.71070402130991 40.0 35.0 41.0 34.0 41.0 27 37.74608832640753 40.0 35.0 41.0 34.0 41.0 28 37.66924882831187 40.0 35.0 41.0 34.0 41.0 29 37.63818725611608 40.0 35.0 41.0 34.0 41.0 30 37.573677692607575 40.0 35.0 41.0 33.0 41.0 31 37.460366134861886 40.0 35.0 41.0 33.0 41.0 32 37.26152103627529 40.0 35.0 41.0 33.0 41.0 33 36.9802679233542 40.0 35.0 41.0 32.0 41.0 34 36.80323879071701 40.0 35.0 41.0 32.0 41.0 35 36.64897318183886 40.0 35.0 41.0 31.0 41.0 36 36.570574917326965 39.0 35.0 41.0 31.0 41.0 37 36.48215012611558 39.0 35.0 41.0 31.0 41.0 38 36.4077370155065 39.0 35.0 41.0 31.0 41.0 39 36.32528226892441 39.0 35.0 41.0 31.0 41.0 40 36.21732524291545 39.0 35.0 41.0 31.0 41.0 41 36.171752692945766 39.0 35.0 41.0 31.0 41.0 42 36.069095472752025 39.0 35.0 41.0 31.0 41.0 43 35.948146267015765 38.0 35.0 41.0 30.0 41.0 44 35.77565139219055 38.0 35.0 41.0 30.0 41.0 45 35.679159139290384 38.0 35.0 41.0 29.0 41.0 46 35.63746475097246 38.0 35.0 40.0 29.0 41.0 47 35.52059846792016 37.0 35.0 40.0 29.0 41.0 48 35.413985608927334 37.0 35.0 40.0 29.0 41.0 49 35.33998079058665 37.0 35.0 40.0 29.0 41.0 50 35.17548204928284 37.0 35.0 40.0 28.0 41.0 51 34.95516225313383 36.0 35.0 40.0 28.0 41.0 52 34.50281992220311 36.0 34.0 39.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 1.0 13 6.0 14 7.0 15 31.0 16 52.0 17 103.0 18 283.0 19 574.0 20 1127.0 21 1828.0 22 2853.0 23 4660.0 24 7979.0 25 13318.0 26 19400.0 27 23163.0 28 24175.0 29 24572.0 30 25084.0 31 28916.0 32 35404.0 33 45796.0 34 91197.0 35 146166.0 36 146806.0 37 155692.0 38 244885.0 39 581226.0 40 979.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.485429992018624 16.899118605214582 22.57468858491065 28.040762817856148 2 34.59182456222337 19.82345048779858 24.215236434427894 21.369488515550156 3 27.135325520849346 20.614086329218846 32.48069527746042 19.769892872471388 4 23.510809291846577 24.056223813031657 30.41611377088655 22.01685312423522 5 21.891290953743685 32.26277542818422 27.574055239976243 18.271878378095856 6 78.23267248196196 2.266452518191757 16.426938435182986 3.073936564663288 7 77.6724389191077 2.281025600663106 14.997239108004374 5.049296372224812 8 67.23491440005017 4.117479951250886 21.221790017254037 7.4258156314449 9 37.612326491158385 17.334158936374045 25.71441923499311 19.339095337474465 10 25.36995337843405 17.59954891083118 36.71783437845495 20.312663332279808 11 22.60961479100232 15.068997703970888 39.11181674072088 23.20957076430591 12 20.0110558659424 16.707454900306587 42.369976744557846 20.911512489193168 13 16.66004626492511 21.184711668181365 41.491410489913825 20.663831576979693 14 15.155452362007665 19.696965970315183 42.594721961573796 22.552859706103355 15 17.390668062075182 16.180118380161915 43.387755905172895 23.04145765259001 16 17.750567858297988 19.867046755613714 37.830246340434584 24.552139045653718 17 18.032683058207475 20.582849511094604 38.125766316625736 23.258701114072185 18 20.563910652861797 24.869549390451617 35.063820262856595 19.502719693829988 19 21.64336408233238 20.13132991368062 33.89606748136551 24.329238522621484 20 20.03423752033775 24.67142925660062 35.49984443080738 19.794488792254253 21 19.23351735180651 19.81453446687729 34.975643890435016 25.976304290881185 22 18.57815906919201 22.816343496777318 32.775661845456455 25.829835588574213 23 18.522018882287618 20.892266181963073 38.00524630968968 22.580468626059623 24 22.663664324725172 19.540166981699407 34.86846716998117 22.92770152359425 25 17.54549937710833 22.302042814117566 35.449607264650865 24.702850544123237 26 18.545077557084056 20.812636891666042 34.90892745802399 25.733358093225917 27 22.57358176852042 21.294962878608068 35.37901697487404 20.75243837799747 28 20.049671460001502 22.8380493959857 33.204245747672914 23.90803339633988 29 22.04532290138389 20.884887406028213 33.90732011466618 23.16246957792172 30 22.765614412225155 23.370551059284775 30.627884640217033 23.235949888273034 31 23.937056581683663 23.37073552868315 29.61207315318462 23.08013473644857 32 23.189832538680157 22.123046007897752 30.469978835211027 24.217142618211067 33 19.975945190452357 24.61608843708917 31.000820273924756 24.407146098533712 34 20.270604309451105 25.57539079842045 31.755730541860412 22.398274350268036 35 21.989367183877867 23.569286091130344 30.259314782270767 24.18203194272102 36 22.53773321543689 24.2659040291806 29.697236525432796 23.499126229949713 37 19.97151792489144 26.28990226811274 30.47901783573123 23.259561971264585 38 20.314016107867864 23.01636981441149 28.666298547733916 28.003315529986732 39 23.91147682510948 20.247853083651954 32.86463758527098 22.976032505967588 40 20.588814021641948 20.416642583161877 34.09375718662031 24.90078620857586 41 21.990043571671897 25.34283637687344 28.5280694785542 24.139050572900462 42 21.088172683033612 20.7067514570008 32.4646464398021 25.74042942016349 43 23.122808657271847 21.49056193068132 32.88868009685873 22.497949315188105 44 20.37519845832775 22.61619419954424 33.29611150806193 23.712495834066086 45 21.83533523623766 22.04722908516706 31.479641342297725 24.637794336297553 46 23.32160517891687 21.809632500064563 30.81167765079451 24.057084670224057 47 20.159615221430915 22.55083054272127 33.195083767553804 24.094470468294016 48 21.651911164456926 20.238814083131746 30.648176274037898 27.461098478373426 49 20.596623226173012 19.171412654354768 35.172411248697955 25.059552870774265 50 20.428694583855485 19.454634670654485 35.052690609154844 25.063980136335186 51 19.652570335107107 17.83585421014508 34.27675082980484 28.234824624942966 52 18.11095957291645 19.328519091967834 37.65850533055071 24.902016004565002 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 242.0 1 3057.0 2 5872.0 3 43698.5 4 81525.0 5 46472.0 6 11419.0 7 10699.5 8 9980.0 9 9769.0 10 9558.0 11 9409.0 12 9260.0 13 8979.0 14 8374.0 15 8050.0 16 7622.0 17 7194.0 18 6892.0 19 6590.0 20 6294.5 21 5999.0 22 5880.5 23 5762.0 24 5999.0 25 6236.0 26 7259.5 27 8283.0 28 9284.0 29 10285.0 30 11310.5 31 12336.0 32 15046.5 33 17757.0 34 18797.0 35 19837.0 36 22054.0 37 24271.0 38 27150.5 39 32017.5 40 34005.0 41 40904.5 42 47804.0 43 59914.0 44 72024.0 45 88144.0 46 104264.0 47 130837.5 48 157411.0 49 170680.0 50 183949.0 51 169575.5 52 155202.0 53 130604.0 54 106006.0 55 94814.0 56 83622.0 57 77363.5 58 71105.0 59 67037.5 60 62970.0 61 60274.0 62 57578.0 63 56112.0 64 47303.5 65 39961.0 66 34095.0 67 28229.0 68 23682.0 69 19135.0 70 17242.5 71 15350.0 72 15677.5 73 16005.0 74 12360.0 75 8715.0 76 6358.0 77 4001.0 78 3084.0 79 2167.0 80 1711.5 81 1256.0 82 1069.5 83 883.0 84 625.5 85 368.0 86 326.0 87 284.0 88 185.0 89 51.5 90 17.0 91 25.0 92 33.0 93 20.0 94 7.0 95 12.0 96 17.0 97 9.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1626286.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.372557106039814 #Duplication Level Percentage of deduplicated Percentage of total 1 72.74170928098465 20.638683005656837 2 11.390400967964865 6.463496038485486 3 4.539010067031641 3.863499669952345 4 2.1689179499214073 2.4615099356983974 5 1.2651256581552237 1.7947424991162642 6 0.8226191093500989 1.4003884593933176 7 0.5941737293759736 1.1800759647339918 8 0.4553321722631358 1.0335150447802384 9 0.3587746378969422 0.9161418511736775 >10 4.939474633087886 33.45453373768791 >50 0.5816962477292497 10.809654397269897 >100 0.1303416757466571 6.498931580216907 >500 0.006756841846738146 1.2942823140814008 >1k 0.0043592528043471905 1.9747870006001897 >5k 8.718505608694383E-4 1.5263737434257314 >10k+ 4.3592528043471916E-4 4.689384757727485 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 65747 4.042769844910428 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 10082 0.6199401581271683 No Hit CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 6895 0.42397216725717374 No Hit CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCTT 6675 0.41044441137659676 Illumina Single End Adapter 2 (95% over 21bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 5596 0.3440969177623124 No Hit GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 5516 0.33917773380573896 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2678 0.16466968294629603 No Hit CGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 2671 0.16423925435009584 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA 2558 0.15729090701143586 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG 2111 0.12980496665408175 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2061 0.12673047668122334 No Hit GCCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 1683 0.10348733248641384 No Hit TCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 1641 0.10090476090921277 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.420774697685401 0.0 2 0.0 0.0 0.0 1.3716529564910478 0.0 3 0.0 0.0 0.0 2.149621899223138 0.0 4 0.0 0.0 0.0 2.7185255238008565 0.0 5 0.0 0.0 0.0 5.459802273400865 0.0 6 0.0 0.0 0.0 6.121186556362165 0.0 7 0.0 0.0 0.0 8.510987612265001 0.0 8 0.0 0.0 0.0 11.083720821552912 0.0 9 0.0 0.0 0.0 13.385468484633083 0.0 10 0.0 0.0 0.0 14.731910623346693 0.0 11 0.0 0.0 0.0 16.018092758592278 0.0 12 0.0 0.0 0.0 16.99116883500196 0.0 13 0.0 0.0 0.0 17.438261166855032 0.0 14 0.0 0.0 0.0 17.743926959956614 0.0 15 6.148979945716805E-5 0.0 0.0 18.785379693362668 0.0 16 6.148979945716805E-5 0.0 0.0 19.87141253137517 0.0 17 6.148979945716805E-5 0.0 0.0 21.199715179248916 0.0 18 6.148979945716805E-5 0.0 0.0 21.897747382686685 0.0 19 6.148979945716805E-5 0.0 0.0 22.681434876768293 0.0 20 6.148979945716805E-5 0.0 0.0 23.56824076453957 0.0 21 1.229795989143361E-4 0.0 0.0 24.394540689644995 0.0 22 3.689387967430083E-4 0.0 0.0 25.23258516644674 0.0 23 3.689387967430083E-4 0.0 0.0 25.946789187141746 0.0 24 8.608571924003527E-4 0.0 0.0 26.491404340933883 0.0 25 8.608571924003527E-4 0.0 0.0 27.032391596558046 0.0 26 8.608571924003527E-4 0.0 0.0 27.560343014697292 0.0 27 8.608571924003527E-4 0.0 0.0 28.144742068738218 0.0 28 9.223469918575208E-4 0.0 0.0 28.75656557333704 0.0 29 9.223469918575208E-4 0.0 0.0 29.366544383952146 0.0 30 9.223469918575208E-4 0.0 0.0 29.95494027495779 0.0 31 9.223469918575208E-4 0.0 0.0 30.497772224565665 0.0 32 9.223469918575208E-4 0.0 0.0 31.069012461522757 0.0 33 9.223469918575208E-4 0.0 0.0 31.595918553071233 0.0 34 9.223469918575208E-4 0.0 0.0 32.212845711025 0.0 35 9.223469918575208E-4 0.0 0.0 32.725301699701035 0.0 36 9.223469918575208E-4 0.0 0.0 33.26481320013823 0.0 37 9.223469918575208E-4 0.0 0.0 33.80776812934502 0.0 38 9.223469918575208E-4 0.0 0.0 34.392105693586494 0.0 39 0.001106816390229025 0.0 0.0 35.02815617917144 0.0 40 0.001106816390229025 0.0 0.0 35.62306998891954 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGTA 20 6.3122314E-4 46.0 21 TATACGG 40 5.6134013E-9 46.0 1 ATCGAAT 20 6.3122314E-4 46.0 13 ACTACGG 135 0.0 45.999996 1 CGTTTTT 15295 0.0 45.022556 1 ACGGGTA 120 0.0 44.083332 4 TAACCGG 65 0.0 42.461536 1 TACGCGG 190 0.0 42.36842 1 TACGGGT 125 0.0 42.32 3 TAGTAGG 350 0.0 42.057144 1 TTCGAAT 170 0.0 41.941177 15 CTCGAGG 280 0.0 41.892857 1 CTCACGA 280 0.0 41.071426 23 TACGGGA 325 0.0 41.046154 3 TAACGGG 370 0.0 41.027023 2 TCGGCGT 920 0.0 41.0 4 CTTGCGG 365 0.0 40.958904 1 TAGGGCG 450 0.0 40.88889 4 ATAACGG 45 1.5890691E-8 40.88889 1 TAATCGT 90 0.0 40.88889 20 >>END_MODULE