SRR1043325_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043325_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1584187
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	62241	3.92889223305077	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9766	0.6164676266122623	No Hit
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT	6472	0.40853762844916663	No Hit
CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	6421	0.4053183115377162	No Hit
GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	5264	0.3322840043504965	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	4697	0.29649277515848826	No Hit
CGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTG	2735	0.17264375985915803	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	2484	0.15679967074594098	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2431	0.15345410611247282	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2037	0.12858330487499264	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCC	1967	0.12416463460437435	No Hit
GCCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTG	1740	0.1098355181553693	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATCG	40	6.8175723E-9	45.000004	8
TACGCTA	25	3.8914768E-5	45.0	37
ACGCTAT	25	3.8914768E-5	45.0	38
GCGATAA	25	3.8914768E-5	45.0	8
CCGGTTA	25	3.8914768E-5	45.0	29
CGATACG	25	3.8914768E-5	45.0	9
CGTTTTT	14605	0.0	43.937008	1
ACGGGAT	165	0.0	43.636364	4
ACTACGG	120	0.0	43.124996	1
TAGTAGG	315	0.0	42.142857	1
ATAACGG	65	0.0	41.538464	1
ACGTAGG	125	0.0	41.399998	1
TACGGGA	305	0.0	41.311478	3
TAACGGG	415	0.0	41.20482	2
TACGCGG	170	0.0	41.02941	1
ACGATAC	55	6.184564E-11	40.90909	44
AGGGTAC	545	0.0	40.458714	5
CGTAGGG	685	0.0	40.401463	2
ATCGCCA	95	0.0	40.26316	23
GTTGATC	1040	0.0	40.240387	15