##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043322_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1139151 Sequences flagged as poor quality 0 Sequence length 52 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26277025609423 33.0 31.0 34.0 31.0 34.0 2 32.59839125805095 34.0 31.0 34.0 31.0 34.0 3 32.658387693993156 34.0 31.0 34.0 31.0 34.0 4 36.18661705076851 37.0 35.0 37.0 35.0 37.0 5 36.0841345879519 37.0 35.0 37.0 35.0 37.0 6 36.322716654771845 37.0 37.0 37.0 35.0 37.0 7 36.25639884440254 37.0 37.0 37.0 35.0 37.0 8 36.23220626589451 37.0 37.0 37.0 35.0 37.0 9 37.76561052924502 39.0 38.0 39.0 35.0 39.0 10 37.593593825577116 39.0 37.0 39.0 35.0 39.0 11 37.29606347183122 39.0 37.0 39.0 34.0 39.0 12 37.31761285378321 39.0 37.0 39.0 34.0 39.0 13 37.3059743616079 39.0 37.0 39.0 34.0 39.0 14 38.72677019991204 40.0 38.0 41.0 35.0 41.0 15 38.82382493629027 41.0 38.0 41.0 35.0 41.0 16 38.841676827742766 41.0 38.0 41.0 35.0 41.0 17 38.81462598022562 41.0 38.0 41.0 35.0 41.0 18 38.49379581811367 40.0 38.0 41.0 35.0 41.0 19 38.16115598371068 40.0 37.0 41.0 34.0 41.0 20 37.80664284190595 40.0 35.0 41.0 34.0 41.0 21 37.73565752038141 39.0 35.0 41.0 34.0 41.0 22 37.69331458252681 39.0 35.0 41.0 34.0 41.0 23 37.689691709000826 39.0 35.0 41.0 34.0 41.0 24 37.59299425624873 39.0 35.0 41.0 34.0 41.0 25 37.511312372108705 39.0 35.0 41.0 34.0 41.0 26 37.46105652367421 39.0 35.0 41.0 34.0 41.0 27 37.46956900358249 39.0 35.0 41.0 34.0 41.0 28 37.45772158388133 39.0 35.0 41.0 33.0 41.0 29 37.39534618325402 39.0 35.0 41.0 33.0 41.0 30 37.336784148896854 39.0 35.0 41.0 33.0 41.0 31 37.1530912056435 39.0 35.0 41.0 33.0 41.0 32 36.90320071702522 39.0 35.0 41.0 33.0 41.0 33 36.590739945801744 39.0 35.0 41.0 31.0 41.0 34 36.32454784308665 39.0 35.0 41.0 31.0 41.0 35 36.1577560832585 39.0 35.0 41.0 30.0 41.0 36 36.08698846772728 39.0 35.0 41.0 30.0 41.0 37 36.048367600081114 39.0 35.0 41.0 30.0 41.0 38 35.96958787728756 39.0 35.0 41.0 29.0 41.0 39 35.9421560442821 39.0 35.0 41.0 29.0 41.0 40 35.89277365336115 39.0 35.0 41.0 29.0 41.0 41 35.8616855886533 39.0 35.0 41.0 29.0 41.0 42 35.78398912874588 39.0 35.0 41.0 28.0 41.0 43 35.6789275521858 39.0 35.0 41.0 28.0 41.0 44 35.521493638683545 39.0 35.0 41.0 27.0 41.0 45 35.44911078513735 38.0 35.0 41.0 26.0 41.0 46 35.423409188070764 38.0 35.0 41.0 25.0 41.0 47 35.34732621048482 38.0 35.0 41.0 25.0 41.0 48 35.296121409716534 38.0 35.0 41.0 25.0 41.0 49 35.24142804597459 38.0 35.0 41.0 25.0 41.0 50 35.109233104303115 38.0 35.0 40.0 24.0 41.0 51 35.01795459952192 38.0 35.0 40.0 24.0 41.0 52 34.71457164151197 38.0 35.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 2.0 14 7.0 15 15.0 16 37.0 17 106.0 18 238.0 19 453.0 20 883.0 21 1406.0 22 2367.0 23 3962.0 24 7565.0 25 14286.0 26 19398.0 27 20602.0 28 18480.0 29 17239.0 30 17976.0 31 20840.0 32 25115.0 33 33345.0 34 59320.0 35 102334.0 36 119749.0 37 83601.0 38 137391.0 39 430815.0 40 1618.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.813522526864308 18.186351063204086 25.43350266997088 30.566623739960725 2 35.59931914206282 19.1263493601814 25.07736024460322 20.19697125315257 3 20.244287192830452 20.558117404979672 39.699477944539396 19.49811745765048 4 21.704585256915017 23.723896129661476 37.56490579387632 17.00661281954719 5 19.731361338400262 27.986544365057835 33.57272214131402 18.709372155227886 6 70.69607102131324 1.5321059280112996 23.71485430816459 4.05696874251087 7 71.45444282628027 1.346090202264669 20.56496460960838 6.634502361846674 8 60.769028864478905 3.2543534614814016 27.53357544346623 8.44304223057347 9 33.04136150519115 18.27123884366515 31.099388930879222 17.588010720264478 10 25.392419442198623 20.15044537554723 42.341182161100676 12.115953021153473 11 22.206713596353776 16.838944090818515 42.199322126741755 18.755020186085954 12 18.090139059703237 19.678163825515668 44.20414852815825 18.027548586622842 13 13.913432020864661 22.273517733821066 43.388716684618636 20.42433356069564 14 12.268610570503823 22.1970572821338 45.030729025388204 20.503603121974173 15 13.756999730501049 18.799702585522024 47.41022041853977 20.033077265437154 16 14.219712750987359 24.55469029127833 39.92315329574394 21.302443661990377 17 15.368901927839243 21.670524803120923 42.606379663451115 20.354193605588726 18 17.05155857300744 27.53928144732349 39.56183157456737 15.847328405101694 19 16.96421282165402 23.261534247874074 37.81816458046387 21.95608835000803 20 13.988751271780476 28.702516172131702 36.83243046795376 20.47630208813406 21 14.557683748686523 23.13644108638802 38.8870307799405 23.418844384984958 22 13.085885892212708 26.159130791264722 35.17558251715532 25.579400799367246 23 12.771265617990943 22.57988624861849 44.16280194636181 20.486046187028762 24 16.868703095550984 21.671666003892373 40.10100504674095 21.358625853815695 25 13.955656449408375 25.338958575289844 39.49134048076155 21.214044494540232 26 14.859926383771773 23.194817895081513 37.966871819451505 23.97838390169521 27 18.38456885873778 23.2648700655137 38.65062665090054 19.699934424847978 28 14.352443179174665 22.799172366086673 35.96617129774718 26.88221315699148 29 15.62479425466861 26.923296384763738 34.62771836218377 22.824190998383884 30 17.749095598388624 24.01147872406731 33.10052837595718 25.138897301586884 31 16.58708985902659 25.565618605435102 32.3582211664652 25.489070369073108 32 14.524150002940786 30.786348780802548 31.158994725018896 23.530506491237773 33 12.822356298682088 25.169534153066625 35.56622431969071 26.44188522856057 34 12.4502370625141 29.54261550926962 32.93856565108577 25.06858177713051 35 18.262460376192447 26.58163843072604 33.83142357773465 21.32447761534687 36 14.233933868293141 31.996372737240282 33.77603144798187 19.993661946484707 37 16.95499543080768 27.97381558722241 36.8464760159101 18.224712966059812 38 16.933400400824823 29.725646556075535 32.46417726886076 20.876775774238883 39 20.828845341837912 27.20710423815631 34.49560242671954 17.46844799328623 40 15.476701508404068 24.749221130473483 37.960551322871154 21.813526038251293 41 18.137454999381116 25.93176848372165 31.931236508592804 23.99954000830443 42 17.75164135395571 22.331894542514558 36.37085864823891 23.545605455290826 43 20.03887105396914 24.253764426313985 34.88940447754512 20.817960042171755 44 14.890036527203154 26.64168314823935 35.72748476716432 22.74079555739318 45 17.78710636254544 23.77156320803827 35.38828478401898 23.05304564539732 46 20.766167084082795 22.83533965207422 33.40970600034587 22.988787263497112 47 16.270801675985012 21.218433728276583 37.51916997834352 24.991594617394885 48 16.451462536573292 20.063801901591624 34.30352955841675 29.181206003418335 49 17.94424093030687 19.886915782016608 38.69557240436079 23.473270883315735 50 17.06885215392867 19.419199035070854 39.25397072029959 24.25797809070088 51 15.156638584349222 19.147066543416983 38.04552688800695 27.65076798422685 52 14.282917716790838 19.067972551487905 43.863631774892006 22.785477956829254 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 407.0 1 1550.0 2 2693.0 3 47746.0 4 92799.0 5 51472.5 6 10146.0 7 9699.5 8 9253.0 9 9701.5 10 10150.0 11 10379.5 12 10609.0 13 10348.5 14 9443.0 15 8798.0 16 7987.5 17 7177.0 18 6618.5 19 6060.0 20 5568.5 21 5077.0 22 4942.5 23 4808.0 24 4781.0 25 4754.0 26 5215.0 27 5676.0 28 6269.5 29 6863.0 30 6895.0 31 6927.0 32 8516.5 33 10106.0 34 12065.0 35 14024.0 36 17093.5 37 20163.0 38 22823.5 39 28768.5 40 32053.0 41 43143.0 42 54233.0 43 77539.0 44 100845.0 45 128811.5 46 156778.0 47 159577.5 48 162377.0 49 143608.0 50 124839.0 51 102327.0 52 79815.0 53 65418.5 54 51022.0 55 41833.0 56 32644.0 57 28137.0 58 23630.0 59 20344.5 60 17059.0 61 14030.0 62 11001.0 63 9047.5 64 5656.5 65 4219.0 66 3468.0 67 2717.0 68 2294.0 69 1871.0 70 1576.5 71 1282.0 72 1391.0 73 1500.0 74 1209.0 75 918.0 76 702.5 77 487.0 78 453.0 79 419.0 80 279.0 81 139.0 82 104.5 83 70.0 84 51.5 85 33.0 86 28.5 87 24.0 88 19.5 89 8.5 90 2.0 91 1.0 92 0.0 93 1.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1139151.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.78612464409995 #Duplication Level Percentage of deduplicated Percentage of total 1 75.0859468911143 26.119491075745714 2 11.614535321094236 8.08049346725771 3 4.365979680085302 4.5562654003516485 4 2.101639064380244 2.9243151380176298 5 1.2326915106306746 2.1440280268261254 6 0.7721159379371139 1.6115352754065948 7 0.5511152428936108 1.3419814472792393 8 0.4322601773784367 1.2029325127173642 9 0.32170213692967126 1.0071693570157967 >10 3.1018694185157467 22.643791193482173 >50 0.26863091515805887 6.2827937630617505 >100 0.1403841496780721 8.694776268402023 >500 0.006070665929768986 1.4387172799286814 >1k 0.00404711061984599 2.9283805145438473 >5k 7.588332412211233E-4 1.7562715985185298 >10k+ 2.529444137403744E-4 7.267057681445159 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 82590 7.250136285707513 No Hit CCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGCT 7853 0.6893730506315668 Illumina Single End Adapter 2 (95% over 22bp) CTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGCTT 7089 0.6223055591400964 Illumina Single End Adapter 2 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC 5018 0.44050349778036446 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGCT 4561 0.40038590143010017 Illumina Single End Adapter 2 (95% over 22bp) CGTTCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCT 3675 0.32260867962192896 No Hit CGTTTCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC 3137 0.2753805246187731 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCG 2655 0.23306831140033232 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTT 2563 0.22499212132544325 No Hit TCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGCT 2416 0.2120877741405661 Illumina Single End Adapter 2 (95% over 22bp) CGTCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTG 1928 0.169248852873763 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCT 1773 0.1556422282910694 No Hit ACCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC 1705 0.14967287040962965 Illumina Single End Adapter 2 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC 1643 0.1442302205765522 Illumina Single End Adapter 2 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC 1488 0.1306235959938586 Illumina Single End Adapter 2 (95% over 21bp) AGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC 1329 0.11666583271225676 Illumina Single End Adapter 2 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGCT 1240 0.10885299666154881 Illumina Single End Adapter 2 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6396869247360534 0.0 2 0.0 0.0 0.0 2.0882218424071963 0.0 3 0.0 0.0 0.0 3.5672180422086273 0.0 4 0.0 0.0 0.0 4.460163753532236 0.0 5 0.0 0.0 0.0 8.85808817268299 0.0 6 0.0 0.0 0.0 10.402220601131896 0.0 7 0.0 0.0 0.0 14.253685420106729 0.0 8 0.0 0.0 0.0 18.68689927849776 0.0 9 0.0 0.0 0.0 22.064239069271764 0.0 10 8.77846747270555E-5 0.0 0.0 24.09461081103383 0.0 11 8.77846747270555E-5 0.0 0.0 25.90552086597826 0.0 12 8.77846747270555E-5 0.0 0.0 27.22562680452372 0.0 13 8.77846747270555E-5 0.0 0.0 27.8290586585975 0.0 14 8.77846747270555E-5 0.0 0.0 28.267191970160233 0.0 15 8.77846747270555E-5 0.0 0.0 29.45351406442166 0.0 16 8.77846747270555E-5 0.0 0.0 30.90046885794772 0.0 17 8.77846747270555E-5 0.0 0.0 32.474009152430185 0.0 18 8.77846747270555E-5 0.0 0.0 33.37222194423742 0.0 19 1.75569349454111E-4 0.0 0.0 34.32292997153143 0.0 20 1.75569349454111E-4 0.0 0.0 35.43279161410559 0.0 21 1.75569349454111E-4 0.0 0.0 36.528081000675066 0.0 22 3.51138698908222E-4 0.0 0.0 37.63372897886233 0.0 23 4.389233736352775E-4 0.0 0.0 38.51851071543632 0.0 24 7.02277397816444E-4 0.0 0.0 39.260642355578845 0.0 25 7.02277397816444E-4 0.0 0.0 39.95975950510512 0.0 26 7.900620725434995E-4 0.0 0.0 40.6816128853857 0.0 27 7.900620725434995E-4 0.0 0.0 41.37686750922398 0.0 28 7.900620725434995E-4 0.0 0.0 42.064572651035725 0.0 29 7.900620725434995E-4 0.0 0.0 42.866573439342105 0.0 30 7.900620725434995E-4 0.0 0.0 43.568411913784914 0.0 31 7.900620725434995E-4 0.0 0.0 44.18167565142812 0.0 32 7.900620725434995E-4 0.0 0.0 44.80345450251986 0.0 33 7.900620725434995E-4 0.0 0.0 45.404516170376006 0.0 34 7.900620725434995E-4 0.0 0.0 46.11460640424316 0.0 35 7.900620725434995E-4 0.0 0.0 46.69793556780444 0.0 36 7.900620725434995E-4 0.0 0.0 47.270555001049026 0.0 37 7.900620725434995E-4 0.0 0.0 47.84335000364307 0.0 38 7.900620725434995E-4 0.0 0.0 48.40736653876439 0.0 39 7.900620725434995E-4 0.0 0.0 48.9625168217383 0.0 40 7.900620725434995E-4 0.0 0.0 49.5115221774813 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 80 0.0 46.000004 24 CGAACTC 35 1.01956175E-7 46.000004 30 GTCGAGC 20 6.3114293E-4 46.000004 1 CGACGGT 80 0.0 46.000004 27 CTATCGG 35 1.01956175E-7 46.000004 1 GCGAACT 35 1.01956175E-7 46.000004 29 CGTTGAC 20 6.3114293E-4 46.000004 30 TAACGTG 20 6.3114293E-4 46.000004 44 ACTACGG 80 0.0 46.000004 1 TCGTATC 35 1.01956175E-7 46.000004 6 TACTCGA 20 6.3114293E-4 46.000004 19 GCGTGAC 20 6.3114293E-4 46.000004 8 GCTACGG 145 0.0 46.000004 1 TATCGGT 35 1.01956175E-7 46.000004 9 TACCGTA 20 6.3114293E-4 46.000004 14 TAGTAAC 20 6.3114293E-4 46.000004 10 TCGTTAG 25 3.4171368E-5 46.0 14 CGAGTTG 30 1.8613882E-6 46.0 34 CCTACGG 50 1.6370905E-11 46.0 1 ACGATGG 25 3.4171368E-5 46.0 1 >>END_MODULE