##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043319_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 832807 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.10282694549878 33.0 31.0 34.0 30.0 34.0 2 32.3929722012423 34.0 31.0 34.0 30.0 34.0 3 32.445811574590515 34.0 31.0 34.0 31.0 34.0 4 36.04107674407155 37.0 35.0 37.0 35.0 37.0 5 35.98955220117026 37.0 35.0 37.0 35.0 37.0 6 36.26032442090424 37.0 37.0 37.0 35.0 37.0 7 36.1849648237827 37.0 37.0 37.0 35.0 37.0 8 36.08805641643262 37.0 36.0 37.0 35.0 37.0 9 37.67161299076497 39.0 38.0 39.0 35.0 39.0 10 37.48590729905008 39.0 37.0 39.0 35.0 39.0 11 37.17897063785487 39.0 37.0 39.0 34.0 39.0 12 37.1429767040863 39.0 37.0 39.0 33.0 39.0 13 37.17371131606723 39.0 37.0 39.0 34.0 39.0 14 38.554931694858475 40.0 38.0 41.0 34.0 41.0 15 38.6916092203836 40.0 38.0 41.0 35.0 41.0 16 38.740223124925706 40.0 38.0 41.0 35.0 41.0 17 38.72353018166274 40.0 38.0 41.0 35.0 41.0 18 38.47691481939993 40.0 38.0 41.0 35.0 41.0 19 38.230430339802616 40.0 37.0 41.0 35.0 41.0 20 37.94245965751969 40.0 35.0 41.0 34.0 41.0 21 37.879182091408936 40.0 35.0 41.0 34.0 41.0 22 37.85015856014659 40.0 35.0 41.0 34.0 41.0 23 37.82315350375297 40.0 35.0 41.0 34.0 41.0 24 37.742714698603635 39.0 35.0 41.0 34.0 41.0 25 37.71905855738484 39.0 35.0 41.0 34.0 41.0 26 37.710016846640336 40.0 35.0 41.0 34.0 41.0 27 37.70223953448998 40.0 35.0 41.0 34.0 41.0 28 37.65568012756857 40.0 35.0 41.0 34.0 41.0 29 37.66594901339686 40.0 35.0 41.0 34.0 41.0 30 37.469478522634894 39.0 35.0 41.0 34.0 41.0 31 37.39217489766536 40.0 35.0 41.0 33.0 41.0 32 37.21640908397744 40.0 35.0 41.0 33.0 41.0 33 36.97613132454458 39.0 35.0 41.0 33.0 41.0 34 36.79206106576914 39.0 35.0 41.0 32.0 41.0 35 36.70601351813806 40.0 35.0 41.0 32.0 41.0 36 36.652105469814735 39.0 35.0 41.0 32.0 41.0 37 36.592234455281954 39.0 35.0 41.0 32.0 41.0 38 36.56399501925416 39.0 35.0 41.0 31.0 41.0 39 36.502624257481024 39.0 35.0 41.0 31.0 41.0 40 36.40556935760626 39.0 35.0 41.0 31.0 41.0 41 36.352950923803476 39.0 35.0 41.0 31.0 41.0 42 36.22161437163712 39.0 35.0 41.0 31.0 41.0 43 36.08006416852884 39.0 35.0 41.0 30.0 41.0 44 35.97774514383284 38.0 35.0 41.0 30.0 41.0 45 35.9198817973432 38.0 35.0 41.0 30.0 41.0 46 35.84561489036476 38.0 35.0 40.0 29.0 41.0 47 35.67285457494954 38.0 35.0 40.0 28.0 41.0 48 35.689157271732824 38.0 35.0 40.0 29.0 41.0 49 35.637240080835056 38.0 35.0 40.0 29.0 41.0 50 35.5209922587106 38.0 35.0 40.0 28.0 41.0 51 35.075802676970774 38.0 35.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 6.0 16 20.0 17 48.0 18 120.0 19 247.0 20 441.0 21 754.0 22 1303.0 23 1968.0 24 3714.0 25 6548.0 26 9649.0 27 11277.0 28 11122.0 29 11148.0 30 12808.0 31 15138.0 32 19006.0 33 24958.0 34 45516.0 35 89729.0 36 84659.0 37 63566.0 38 107943.0 39 310995.0 40 122.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.733444843763323 19.331009465578457 25.384753010001116 28.550792680657107 2 33.447845659318425 19.060718749962476 26.83526915599893 20.65616643472017 3 20.7889703136501 21.566461377005716 38.59453630913285 19.050032000211335 4 23.046035876259445 23.741635216802933 35.98877050745251 17.223558399485114 5 19.899688643347137 28.704129528210014 31.15787931657635 20.238302511866497 6 70.06569349200956 1.5426143152014813 23.559960471033506 4.83173172175546 7 70.76945798966628 1.4985464819580048 18.629046105520246 9.102949422855476 8 56.122847190285384 2.93741527148547 29.312673884825657 11.62706365340349 9 33.01269081551908 17.0211105334129 30.411968199114558 19.55423045195345 10 26.62645727041199 17.26186259241337 44.3715050425849 11.740175094589743 11 22.59719238671145 15.28337297837314 40.59944260795118 21.51999202696423 12 16.063505710206567 21.144274723915625 44.822629973091004 17.969589592786804 13 11.078917444257794 24.676065402908478 44.43106265917554 19.813954493658194 14 9.187002510785812 22.5606893313817 47.39729613223712 20.855012025595364 15 9.387649239259515 17.809408422359564 52.054917886136884 20.74802445224404 16 9.222665035236254 25.535688340756025 39.83636064538362 25.405285978624097 17 11.951988876174191 22.688930328395415 42.3752442042394 22.983836591190997 18 13.972505034179589 29.807386345215637 40.71147336657833 15.508635254026442 19 14.19776730983289 23.539307426570623 36.256779782110385 26.006145481486108 20 11.071472742183964 31.640464117136386 35.62458048503434 21.663482655645304 21 13.131253699836817 24.476619432833775 36.4113173880623 25.9808094792671 22 10.411656001930819 27.715545138309356 31.0463288613088 30.826469998451024 23 10.098498211470366 23.93039443712649 43.8975657024977 22.073541648905447 24 16.55113369604242 20.832317691854175 39.54121423090824 23.075334381195162 25 11.685300435755224 26.479604518213705 37.95609306838199 23.879001977649082 26 15.702917962985422 22.563691227379213 36.22556006373625 25.507830745899106 27 22.17920838801787 24.029457005044385 37.49488176732424 16.2964528396135 28 13.842342823727465 24.240910559109132 35.01915810025612 26.897588516907277 29 21.878418409067166 22.5355934808425 33.225345127982834 22.3606429821075 30 20.65592628304037 27.79611602688258 30.22957299830573 21.31838469177132 31 22.5101374027836 20.760152112073985 35.765789672757315 20.963920812385105 32 21.38262526611808 24.159018836297005 34.97617094957175 19.482184948013163 33 16.930693425967842 28.163067793618453 34.946031913756734 19.96020686665698 34 14.818319250438577 19.551588783475644 45.933811795530055 19.69628017055572 35 22.786792137914308 22.154352689158472 39.16525677617984 15.893598396747386 36 15.223455134262801 24.787735934015924 38.56763932099514 21.421169610726135 37 18.1673545011029 23.192648476777933 43.196322797478885 15.443674224640283 38 18.5923028985107 19.638883919083295 36.155555849074275 25.613257333331735 39 24.990303875928035 17.607681011326754 35.35248863181985 22.04952648092535 40 16.207716793927045 16.627141702699426 41.153712684931804 26.01142881844173 41 21.705509199610475 20.678620616781558 32.00069163683782 25.61517854677014 42 20.59925048660734 15.871264290525897 39.48285737271661 24.046627850150156 43 23.192648476777933 20.091689911348006 36.70082023806236 20.0148413738117 44 15.039498947535263 23.90025540131147 38.42931195342978 22.63093369772348 45 19.84517421203232 20.505471255645066 37.0090549190869 22.64029961323572 46 25.533166748118113 16.157284941168843 36.033078492375786 22.27646981833726 47 17.740244738576884 15.45544165695053 40.41728755882215 26.38702604565043 48 18.098310893160118 13.442370201018964 34.30134472933105 34.15797417648987 49 21.001624626113855 13.772218533225585 41.540597041091154 23.685559799569408 50 18.70481396049745 13.662589291396445 41.16692102732086 26.46567572078525 51 15.970567010123593 12.845713352553473 39.15312911634989 32.03059052097304 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 346.0 1 1473.5 2 2601.0 3 30733.5 4 58866.0 5 31969.0 6 5072.0 7 4784.0 8 4496.0 9 4914.0 10 5332.0 11 5458.5 12 5585.0 13 5366.5 14 5148.0 15 4833.0 16 4518.0 17 4107.0 18 3696.0 19 3372.0 20 3048.0 21 2871.5 22 2695.0 23 2587.0 24 2479.0 25 2294.5 26 2314.5 27 2519.0 28 2647.5 29 2776.0 30 3391.0 31 4006.0 32 4921.0 33 5836.0 34 6524.0 35 7212.0 36 9090.5 37 10969.0 38 13171.5 39 15374.0 40 22116.5 41 28859.0 42 41484.0 43 54109.0 44 80294.5 45 106480.0 46 133595.5 47 160711.0 48 153530.0 49 146349.0 50 112308.0 51 78267.0 52 59141.5 53 40016.0 54 29925.5 55 19835.0 56 16935.5 57 14036.0 58 11909.0 59 9782.0 60 7955.5 61 6129.0 62 5321.5 63 4514.0 64 3663.5 65 2813.0 66 2274.0 67 1735.0 68 1483.5 69 1232.0 70 1112.0 71 992.0 72 944.5 73 897.0 74 737.5 75 436.5 76 295.0 77 329.0 78 363.0 79 213.5 80 64.0 81 51.0 82 38.0 83 28.0 84 18.0 85 12.0 86 6.0 87 4.0 88 2.0 89 1.5 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 832807.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.16826248988793 #Duplication Level Percentage of deduplicated Percentage of total 1 70.54910608618924 18.461475264903502 2 12.1178851158149 6.342079970659005 3 5.248145495895662 4.1200454676516225 4 2.9112734212752374 3.0473186827105794 5 1.6673752914029518 2.1816157147292907 6 1.1343854515468625 1.7810937756473009 7 0.7834104952106312 1.435034403320342 8 0.5731742959847607 1.1999180343828746 9 0.48261880343277985 1.1366365977706148 >10 3.6723671361835075 21.111386618476764 >50 0.5511391946376596 9.78746307350948 >100 0.28598154682503085 14.102423440388382 >500 0.013419846048423776 2.4323041544903825 >1k 0.00786680630424842 3.535232872955901 >5k 0.001388259936043839 2.648700028436132 >10k+ 4.6275331201461303E-4 6.677271899967849 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 55141 6.621101887952431 No Hit CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 8554 1.0271287345087157 Illumina Single End Adapter 2 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT 7784 0.9346703377853453 Illumina Single End Adapter 2 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 5535 0.6646197738491632 Illumina Single End Adapter 2 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG 3467 0.4163029369349681 No Hit TCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 2864 0.343897205474978 Illumina Single End Adapter 2 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCC 2691 0.32312408517219476 No Hit ACCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG 2460 0.2953865661551836 No Hit GCCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG 2127 0.2554013114683234 No Hit AGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG 1912 0.22958500588971995 No Hit ACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 1602 0.19236149552057077 Illumina Single End Adapter 2 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC 1552 0.18635770352554673 No Hit TCCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG 1500 0.1801137598507217 No Hit TGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCTT 1347 0.1617421563459481 Illumina Single End Adapter 2 (95% over 23bp) TGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG 1270 0.15249631667361105 No Hit GGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG 1227 0.14733305555789036 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTC 1066 0.1280008453339129 No Hit CGTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCT 1061 0.1274004661344105 No Hit CGGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCT 1033 0.12403834261719701 No Hit ATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG 1014 0.12175690165908788 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGC 1001 0.12019591574038162 No Hit GTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG 922 0.11070992438824362 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCT 917 0.1101095451887412 No Hit ATGCCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC 905 0.10866863510993544 No Hit ATTGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC 887 0.10650726999172679 No Hit GTACCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC 874 0.10494628407302052 No Hit ATAGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC 847 0.10170423639570753 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCG 834 0.10014325047700127 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.9577248990462376 0.0 2 0.0 0.0 0.0 3.2454098008302044 0.0 3 0.0 0.0 0.0 5.438715092452393 0.0 4 0.0 0.0 0.0 6.78560578861609 0.0 5 1.2007583990048115E-4 0.0 0.0 13.49160129537816 0.0 6 1.2007583990048115E-4 0.0 0.0 15.109263010517443 0.0 7 1.2007583990048115E-4 0.0 0.0 20.58400085493998 0.0 8 1.2007583990048115E-4 0.0 0.0 27.496766958010678 0.0 9 1.2007583990048115E-4 0.0 0.0 32.39069796483459 0.0 10 1.2007583990048115E-4 0.0 0.0 35.351528025100656 0.0 11 1.2007583990048115E-4 0.0 0.0 38.037384411994616 0.0 12 1.2007583990048115E-4 0.0 0.0 39.92557699442968 0.0 13 1.2007583990048115E-4 0.0 0.0 40.650354764068986 0.0 14 1.2007583990048115E-4 0.0 0.0 41.15479336749091 0.0 15 1.2007583990048115E-4 0.0 0.0 42.84113846305326 0.0 16 1.2007583990048115E-4 0.0 0.0 44.74938371075171 0.0 17 1.2007583990048115E-4 0.0 0.0 47.04979665156513 0.0 18 1.2007583990048115E-4 0.0 0.0 48.07332311087683 0.0 19 1.2007583990048115E-4 0.0 0.0 49.27384135820184 0.0 20 2.401516798009623E-4 0.0 0.0 50.46463346249491 0.0 21 2.401516798009623E-4 0.0 0.0 51.46522543638562 0.0 22 8.40530879303368E-4 0.0 0.0 52.56283868891592 0.0 23 8.40530879303368E-4 0.0 0.0 53.37094909144616 0.0 24 0.006724247034426944 0.0 0.0 54.008912028837415 0.0 25 0.006964398714227906 0.0 0.0 54.61601547537425 0.0 26 0.006964398714227906 0.0 0.0 55.18157268130551 0.0 27 0.006964398714227906 0.0 0.0 55.7015010680746 0.0 28 0.007444702073829831 0.0 0.0 56.23583855563174 0.0 29 0.007444702073829831 0.0 0.0 56.90658219731583 0.0 30 0.007444702073829831 0.0 0.0 57.51872882912848 0.0 31 0.007444702073829831 0.0 0.0 58.01704356471547 0.0 32 0.007444702073829831 0.0 0.0 58.50323064047252 0.0 33 0.007444702073829831 0.0 0.0 58.95255443338012 0.0 34 0.007444702073829831 0.0 0.0 59.51258815067597 0.0 35 0.007444702073829831 0.0 0.0 59.93717632056407 0.0 36 0.007444702073829831 0.0 0.0 60.35996335285366 0.0 37 0.007444702073829831 0.0 0.0 60.79932085104952 0.0 38 0.007444702073829831 0.0 0.0 61.21010029934907 0.0 39 0.007564777913730312 0.0 0.0 61.62508240204513 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACGCA 65 0.0 45.000004 16 CGCGGCT 30 2.1647793E-6 45.000004 3 GCTATCA 35 1.2113924E-7 45.000004 42 TTGTAGG 155 0.0 45.000004 1 TTGTAGC 30 2.1647793E-6 45.000004 1 CTTGCGG 120 0.0 45.000004 1 ATGCGGC 35 1.2113924E-7 45.000004 2 CGATGTA 30 2.1647793E-6 45.000004 9 TAAGGGT 95 0.0 45.000004 3 TGGGCGC 35 1.2113924E-7 45.000004 5 AGCTATC 35 1.2113924E-7 45.000004 41 TATACGG 65 0.0 45.000004 1 GCGTAGG 120 0.0 45.000004 1 ACCCACG 35 1.2113924E-7 45.000004 22 TGCACGG 65 0.0 45.000004 1 GAGATGT 30 2.1647793E-6 45.000004 8 AGCACGG 60 0.0 45.000004 1 TCACGGC 20 7.0321665E-4 45.0 2 AGCGTGT 20 7.0321665E-4 45.0 24 GGTACCC 20 7.0321665E-4 45.0 28 >>END_MODULE