##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043317_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 609681 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.218878397063385 33.0 31.0 34.0 30.0 34.0 2 32.496123382555794 34.0 31.0 34.0 31.0 34.0 3 32.57724777383583 34.0 31.0 34.0 31.0 34.0 4 36.12827199797927 37.0 35.0 37.0 35.0 37.0 5 36.08002545593515 37.0 35.0 37.0 35.0 37.0 6 36.30778062626193 37.0 37.0 37.0 35.0 37.0 7 36.23924478538777 37.0 37.0 37.0 35.0 37.0 8 36.144263967550245 37.0 37.0 37.0 35.0 37.0 9 37.713404222864085 39.0 38.0 39.0 35.0 39.0 10 37.56688661775584 39.0 37.0 39.0 35.0 39.0 11 37.202432091536394 39.0 37.0 39.0 35.0 39.0 12 37.135688991456185 39.0 37.0 39.0 34.0 39.0 13 37.16639685343647 39.0 37.0 39.0 34.0 39.0 14 38.54902645809858 40.0 37.0 41.0 35.0 41.0 15 38.68677062266989 40.0 38.0 41.0 35.0 41.0 16 38.72851868436116 40.0 38.0 41.0 35.0 41.0 17 38.73188929948613 40.0 37.0 41.0 35.0 41.0 18 38.51815293571556 40.0 37.0 41.0 35.0 41.0 19 38.282036015555676 40.0 37.0 41.0 35.0 41.0 20 38.03676676819517 40.0 35.0 41.0 35.0 41.0 21 37.99224348470758 40.0 35.0 41.0 34.0 41.0 22 37.96076144737986 40.0 35.0 41.0 34.0 41.0 23 37.92607445532992 40.0 35.0 41.0 34.0 41.0 24 37.82528404198261 40.0 35.0 41.0 34.0 41.0 25 37.79381676647296 40.0 35.0 41.0 34.0 41.0 26 37.749122901976605 40.0 35.0 41.0 34.0 41.0 27 37.7626627695467 40.0 35.0 41.0 34.0 41.0 28 37.64514885653317 40.0 35.0 41.0 34.0 41.0 29 37.67648655608425 40.0 35.0 41.0 34.0 41.0 30 37.53766313859215 40.0 35.0 41.0 34.0 41.0 31 37.41022600343458 40.0 35.0 41.0 34.0 41.0 32 37.242749897077324 40.0 35.0 41.0 33.0 41.0 33 37.042069541284704 40.0 35.0 41.0 33.0 41.0 34 36.843191767498084 40.0 35.0 41.0 33.0 41.0 35 36.68924404729687 39.0 35.0 41.0 32.0 41.0 36 36.63047560937605 39.0 35.0 41.0 32.0 41.0 37 36.51244175232622 39.0 35.0 41.0 31.0 41.0 38 36.46287976827226 39.0 35.0 41.0 31.0 41.0 39 36.34914816108752 39.0 35.0 41.0 31.0 41.0 40 36.276208377823814 39.0 35.0 41.0 31.0 41.0 41 36.237110882576296 39.0 35.0 41.0 31.0 41.0 42 36.090381691409114 39.0 35.0 41.0 30.0 41.0 43 35.90639039104056 38.0 35.0 41.0 30.0 41.0 44 35.80490781244618 38.0 35.0 40.0 30.0 41.0 45 35.75576079950007 38.0 35.0 40.0 29.0 41.0 46 35.66435890244242 38.0 35.0 40.0 29.0 41.0 47 35.5254173904058 38.0 35.0 40.0 28.0 41.0 48 35.57034908419321 38.0 35.0 40.0 28.0 41.0 49 35.470382052253555 38.0 35.0 40.0 28.0 41.0 50 35.32422529158691 38.0 35.0 40.0 27.0 41.0 51 34.837790582288115 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 1.0 15 7.0 16 12.0 17 20.0 18 68.0 19 155.0 20 301.0 21 501.0 22 891.0 23 1485.0 24 2681.0 25 4708.0 26 7161.0 27 8469.0 28 8399.0 29 8350.0 30 9249.0 31 10867.0 32 13296.0 33 18152.0 34 35133.0 35 72858.0 36 54532.0 37 44432.0 38 78733.0 39 229075.0 40 144.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.491457007845085 19.785592793608462 24.880224248418433 26.842725950128017 2 31.529275145526924 20.864189633595274 27.104174150088323 20.50236107078948 3 21.995108917614292 22.32741384428906 36.45070126836821 19.226775969728433 4 23.43061371438506 25.019477398836443 33.45749662528437 18.092412261494125 5 19.434589564050707 30.572873355082415 30.622243435501517 19.370293645365365 6 74.5542340994717 1.6073979671336323 19.855465399118554 3.9829025342761213 7 74.94837464182089 1.4932399074269986 15.989837308362898 7.568548142389217 8 62.680155687974526 3.170674500271453 24.566617624626648 9.582552187127366 9 33.9799009646028 20.45069470756018 27.628874772216943 17.94052955562007 10 27.806672669806016 18.380431733972355 41.77676522640528 12.036130369816346 11 25.87664696784056 15.782351754442079 37.77942891446511 20.56157236325226 12 16.41891415346714 24.327148131563884 41.51006838002168 17.74386933494729 13 11.890152391168495 27.902788507432575 40.50577269096462 19.70128641043431 14 9.553192571197068 22.47913252996239 47.164336759715326 20.803338139125216 15 10.164987919912216 17.61560553797806 50.45015344089778 21.769253101211945 16 10.143009213014675 24.409978332931484 38.254759456174625 27.19225299787922 17 13.065193109183326 21.715618495573917 42.2509476267097 22.96824076853305 18 15.958509450023865 28.291024322555565 38.27509796106489 17.475368266355684 19 16.86406497824272 22.819966507075012 35.33634802462271 24.979620490059556 20 12.176203621237992 31.11135167407218 34.555939909559264 22.15650479513057 21 14.183646857947025 23.739463752355743 34.431284557006045 27.645604832691195 22 10.945888095577851 28.21918347463674 31.234202804417393 29.600725625368018 23 10.827137470250836 22.578200731202056 45.286469481581356 21.30819231696576 24 15.908975349404034 22.08942053303285 39.06403512656619 22.937568990996933 25 11.402192294002928 28.17539008104238 37.058068071663705 23.36434955329098 26 13.343863430220065 26.82927629366833 34.66238901983168 25.164471256279924 27 19.06406793060633 25.600108909413283 37.461393745253666 17.874429414726716 28 14.364889179751378 25.065075014638804 33.84852078381974 26.721515021790083 29 16.57194500074629 30.72393595995283 30.435096386470956 22.26902265282992 30 21.17238359076304 29.09341114451656 28.557721168939164 21.176484095781237 31 25.85384815993938 24.89859451089996 28.379759251149373 20.867798078011287 32 18.74619678159562 34.02976310562409 26.797784415128568 20.426255697651722 33 17.803736708212984 27.24162307829832 32.935092285965936 22.019547927522755 34 23.52082482478542 26.303099489733157 29.52035572701134 20.655719958470083 35 26.4079083979983 25.951440179372494 30.744602505244544 16.896048917384665 36 20.621111696116493 26.216496823748813 31.612105346894527 21.55028613324017 37 25.00373145956656 23.309566806247858 35.34176069124673 16.34494104293885 38 23.529681915624728 22.498650933849014 28.971544135375716 25.000123015150542 39 26.422506195863082 19.538414351111484 31.982791000539628 22.05628845248581 40 16.91851968488439 18.70765203442456 37.65969416793372 26.714134112757325 41 21.867829241849428 23.695670358761383 27.978893880570332 26.45760651881886 42 21.51239746687202 19.5126631795972 34.5315008996508 24.443438453879978 43 23.713712580841456 23.130456747052968 32.73187125726405 20.423959414841534 44 16.26178280116979 27.692022549497196 33.18407495067092 22.862119698662088 45 21.418085851453466 22.68202551826283 33.74321981495241 22.156668815331297 46 25.943239169336096 19.77378333915605 31.202546905676904 23.080430585830953 47 18.944661224476405 18.16064466499694 37.20880263613267 25.685891474393983 48 19.528573139067806 15.707722563110874 32.414656189056245 32.349048108765075 49 21.163198459522274 17.805376910220264 37.28900851428862 23.742416115968844 50 19.595001320362616 17.224417359241965 37.240458534873156 25.940122785522263 51 17.453225539257414 15.431020484482868 36.6926310644419 30.423122911817817 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 190.0 1 957.0 2 1724.0 3 18656.0 4 35588.0 5 19647.5 6 3707.0 7 3605.5 8 3504.0 9 3659.0 10 3814.0 11 3836.0 12 3858.0 13 3674.5 14 3491.0 15 3224.0 16 2957.0 17 2665.5 18 2374.0 19 2168.0 20 1962.0 21 1814.5 22 1667.0 23 1562.0 24 1457.0 25 1490.0 26 2159.5 27 2796.0 28 2686.5 29 2577.0 30 3507.0 31 4437.0 32 5298.5 33 6160.0 34 8371.5 35 10583.0 36 11053.0 37 11523.0 38 12540.0 39 13557.0 40 17836.5 41 22116.0 42 28763.5 43 35411.0 44 41774.5 45 48138.0 46 60921.5 47 73705.0 48 87587.0 49 101469.0 50 95794.5 51 90120.0 52 69366.0 53 48612.0 54 36999.5 55 25387.0 56 19572.5 57 13758.0 58 11804.5 59 9851.0 60 8208.0 61 6565.0 62 5593.5 63 4622.0 64 4048.0 65 3474.0 66 2800.5 67 2127.0 68 1657.5 69 1188.0 70 1127.5 71 1067.0 72 1184.5 73 1302.0 74 927.5 75 465.5 76 378.0 77 288.5 78 199.0 79 136.0 80 73.0 81 56.0 82 39.0 83 47.0 84 55.0 85 36.0 86 17.0 87 10.5 88 4.0 89 2.0 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 609681.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.276290446160708 #Duplication Level Percentage of deduplicated Percentage of total 1 71.84302656566621 20.314542857020175 2 11.691882617786044 6.61206137525872 3 4.856225082004943 4.119480926721071 4 2.499613429809035 2.827191813776169 5 1.5577008466972546 2.202300078472101 6 0.9755936835623477 1.6551702212309247 7 0.6858061937280019 1.3574438586540258 8 0.5116697247865527 1.1574497400457342 9 0.3946639617381154 1.0043669529665467 >10 4.137512317538331 26.7311406684885 >50 0.6366326379617167 12.043358208133165 >100 0.19503097372700237 9.662078159801892 >500 0.008785178996711818 1.63935539317277 >1k 0.005271107398027091 3.2606594945124425 >5k 0.0 0.0 >10k+ 5.856785997807879E-4 5.4134002517457835 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 32688 5.361492321394303 No Hit CCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 4273 0.7008583177104092 Illumina Single End Adapter 2 (95% over 21bp) CTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGCT 3939 0.6460755706672834 Illumina Single End Adapter 2 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 3679 0.6034303184780238 Illumina Single End Adapter 2 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 1483 0.24324195767950782 Illumina Single End Adapter 2 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG 1429 0.23438486684020005 No Hit ACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG 1407 0.23077642242418575 No Hit GCCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG 1232 0.20207288729679945 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCC 1224 0.2007607256909761 No Hit AGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG 1023 0.16779266534466386 No Hit ACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 870 0.14269757463329186 Illumina Single End Adapter 2 (95% over 21bp) CGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCT 782 0.12826379696923473 No Hit TGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGCTT 761 0.12481937275394839 Illumina Single End Adapter 2 (95% over 23bp) TCCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG 736 0.12071886773575033 No Hit AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC 705 0.11563424151318476 No Hit ATAGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 692 0.11350197890372178 No Hit GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT 679 0.1113697162942588 No Hit GGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG 679 0.1113697162942588 No Hit CGTTCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 672 0.11022157488916336 No Hit TGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG 639 0.10480890826514194 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6851123784405287 0.0 2 0.0 0.0 0.0 2.4839219198236453 0.0 3 0.0 0.0 0.0 4.101489139402409 0.0 4 0.0 0.0 0.0 5.165488181524436 0.0 5 0.0 0.0 0.0 10.507298078831388 0.0 6 0.0 0.0 0.0 11.66806903938289 0.0 7 0.0 0.0 0.0 16.0867732469931 0.0 8 0.0 0.0 0.0 21.466963871270387 0.0 9 0.0 0.0 0.0 25.514490364633307 0.0 10 0.0 0.0 0.0 27.904264689239128 0.0 11 0.0 0.0 0.0 30.0206173392315 0.0 12 0.0 0.0 0.0 31.60144403384721 0.0 13 0.0 0.0 0.0 32.245715382306486 0.0 14 0.0 0.0 0.0 32.69267042929007 0.0 15 0.0 0.0 0.0 34.2324920737238 0.0 16 0.0 0.0 0.0 35.92550858563741 0.0 17 3.280404014558433E-4 0.0 0.0 38.03530042760066 0.0 18 3.280404014558433E-4 0.0 0.0 38.93609936999841 0.0 19 3.280404014558433E-4 0.0 0.0 39.960897584146466 0.0 20 3.280404014558433E-4 0.0 0.0 41.017187676834276 0.0 21 0.00295236361310259 0.0 0.0 41.98621902273484 0.0 22 0.0034444242152863545 0.0 0.0 43.02151452972948 0.0 23 0.003772464616742198 0.0 0.0 43.74894411995781 0.0 24 0.00492060602183765 0.0 0.0 44.32088255989608 0.0 25 0.00492060602183765 0.0 0.0 44.856900575874924 0.0 26 0.00492060602183765 0.0 0.0 45.39636301606906 0.0 27 0.00492060602183765 0.0 0.0 45.93402123405519 0.0 28 0.005084626222565571 0.0 0.0 46.48906559331847 0.0 29 0.005084626222565571 0.0 0.0 47.17598219396701 0.0 30 0.005084626222565571 0.0 0.0 47.75366134093075 0.0 31 0.005084626222565571 0.0 0.0 48.21078564035947 0.0 32 0.005084626222565571 0.0 0.0 48.70858694956871 0.0 33 0.005084626222565571 0.0 0.0 49.17046783481854 0.0 34 0.005084626222565571 0.0 0.0 49.78406740574169 0.0 35 0.005084626222565571 0.0 0.0 50.21051992763429 0.0 36 0.005084626222565571 0.0 0.0 50.631231742501406 0.0 37 0.005084626222565571 0.0 0.0 51.08327141570756 0.0 38 0.005084626222565571 0.0 0.0 51.512676301213254 0.0 39 0.005084626222565571 0.0 0.0 51.9488060149488 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATCAGG 30 2.163817E-6 45.000004 1 GGCACTT 30 2.163817E-6 45.000004 7 GCAACAA 45 3.8380676E-10 45.000004 8 TGGGTAC 70 0.0 45.000004 5 ATTACGG 45 3.8380676E-10 45.000004 1 GACCGAG 30 2.163817E-6 45.000004 19 TTCACGG 60 0.0 45.000004 1 ACACAGG 45 3.8380676E-10 45.000004 1 CACGACC 30 2.163817E-6 45.000004 26 TAACCGG 60 0.0 45.000004 1 ATGACGG 35 1.2106648E-7 45.000004 1 GCGATGA 30 2.163817E-6 45.000004 8 TTAGTGC 30 2.163817E-6 45.000004 26 TAGTGCA 30 2.163817E-6 45.000004 27 GCTAAGG 145 0.0 45.000004 1 CGATCTC 45 3.8380676E-10 45.000004 9 AATACGG 45 3.8380676E-10 45.000004 1 CCCATGG 30 2.163817E-6 45.000004 1 TGCACGG 70 0.0 45.000004 1 ACGACCA 30 2.163817E-6 45.000004 27 >>END_MODULE