FastQCFastQC Report
Thu 26 May 2016
SRR1043316_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043316_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences2552238
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1461155.724975492097524No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC180540.7073791707513171No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA138010.540741106432864No Hit
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT95280.373319416135956No Hit
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCTT78480.307494833945737Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC73970.2898240681315771No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCT70180.2749743558398551No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTC66690.26130008251581555No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC48490.18999011847641167No Hit
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT47120.184622280523995No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTT47070.18442637402938125No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC40970.16052578168650417No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCG37060.14520589380770915No Hit
CGTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTG36860.14442226782925416No Hit
GGGCCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCT30100.1179357097574756No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA29790.11672108949087037No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCT29650.11617255130595186No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC27920.10939418659231623No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTTTT379400.045.3270951
TCACGAC4050.043.72839724
CACTTAC44750.043.17318736
CGCACTT45250.042.7977934
ACTTACT44300.042.78103637
GCACTTA45550.042.66739735
CACGACG3950.042.5063325
CCGCACT45700.042.42669733
ACCCGCA46600.042.00214431
CTTACTG45100.041.92017738
ATCAACG53750.041.8065114
TCAACGC53850.041.72887415
CCCGCAC47050.041.64930732
CGCAAGC53450.041.5678219
CTTAATC58500.041.5179510
AACGCAA53900.041.4768117
CAACGCA54000.041.44259316
GCTTATG52250.041.3339724
GACTTAA58500.041.3213658
CTTATGA52150.041.28092225