SRR1043316_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043316_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2552238
Sequences flagged as poor quality	0
Sequence length	52
%GC	46

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	146115	5.724975492097524	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	18054	0.7073791707513171	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	13801	0.540741106432864	No Hit
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	9528	0.373319416135956	No Hit
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCTT	7848	0.307494833945737	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	7397	0.2898240681315771	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCT	7018	0.2749743558398551	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTC	6669	0.26130008251581555	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4849	0.18999011847641167	No Hit
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	4712	0.184622280523995	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTT	4707	0.18442637402938125	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4097	0.16052578168650417	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCG	3706	0.14520589380770915	No Hit
CGTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTG	3686	0.14442226782925416	No Hit
GGGCCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCT	3010	0.1179357097574756	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA	2979	0.11672108949087037	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCT	2965	0.11617255130595186	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2792	0.10939418659231623	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	37940	45.327095	1
TCACGAC	405	43.728397	24
CACTTAC	4475	43.173187	36
CGCACTT	4525	42.79779	34
ACTTACT	4430	42.781036	37
GCACTTA	4555	42.667397	35
CACGACG	395	42.50633	25
CCGCACT	4570	42.426697	33
ACCCGCA	4660	42.002144	31
CTTACTG	4510	41.920177	38
ATCAACG	5375	41.80651	14
TCAACGC	5385	41.728874	15
CCCGCAC	4705	41.649307	32
CGCAAGC	5345	41.56782	19
CTTAATC	5850	41.51795	10
AACGCAA	5390	41.47681	17
CAACGCA	5400	41.442593	16
GCTTATG	5225	41.33397	24
GACTTAA	5850	41.321365	8
CTTATGA	5215	41.280922	25

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content