##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043316_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2552238 Sequences flagged as poor quality 0 Sequence length 52 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.299226404434066 33.0 31.0 34.0 31.0 34.0 2 32.646979239396956 34.0 31.0 34.0 31.0 34.0 3 32.77502960147134 34.0 31.0 34.0 31.0 34.0 4 36.22733734079659 37.0 37.0 37.0 35.0 37.0 5 36.17422473922886 37.0 37.0 37.0 35.0 37.0 6 36.276359806569765 37.0 37.0 37.0 35.0 37.0 7 36.207702808280416 37.0 37.0 37.0 35.0 37.0 8 36.212075049427206 37.0 37.0 37.0 35.0 37.0 9 37.798107386536834 39.0 38.0 39.0 35.0 39.0 10 37.69487093288322 39.0 37.0 39.0 35.0 39.0 11 37.484483422000615 39.0 37.0 39.0 35.0 39.0 12 37.50339858586856 39.0 37.0 39.0 35.0 39.0 13 37.51752932132505 39.0 37.0 39.0 35.0 39.0 14 38.924903163419714 41.0 38.0 41.0 35.0 41.0 15 38.96457187770106 41.0 38.0 41.0 35.0 41.0 16 38.88347364156478 41.0 38.0 41.0 35.0 41.0 17 38.86645328531274 41.0 38.0 41.0 35.0 41.0 18 38.57804170300732 40.0 38.0 41.0 35.0 41.0 19 38.267073838725075 40.0 37.0 41.0 35.0 41.0 20 37.949885159612855 40.0 35.0 41.0 34.0 41.0 21 37.89825517839637 40.0 35.0 41.0 34.0 41.0 22 37.829526478329996 40.0 35.0 41.0 34.0 41.0 23 37.83858637007991 40.0 35.0 41.0 34.0 41.0 24 37.72867263946387 40.0 35.0 41.0 34.0 41.0 25 37.632174193786 39.0 35.0 41.0 34.0 41.0 26 37.541981194543766 39.0 35.0 41.0 34.0 41.0 27 37.56740045403289 39.0 35.0 41.0 34.0 41.0 28 37.515580051703644 39.0 35.0 41.0 34.0 41.0 29 37.428583854640515 39.0 35.0 41.0 33.0 41.0 30 37.3421800788171 39.0 35.0 41.0 33.0 41.0 31 37.1747834645515 39.0 35.0 41.0 33.0 41.0 32 36.876472727073256 39.0 35.0 41.0 33.0 41.0 33 36.49744773018817 39.0 35.0 41.0 31.0 41.0 34 36.13045295932432 39.0 35.0 41.0 30.0 41.0 35 35.91037983134802 39.0 35.0 41.0 29.0 41.0 36 35.79467784744213 39.0 35.0 41.0 29.0 41.0 37 35.66029461202286 39.0 35.0 41.0 28.0 41.0 38 35.518982947515084 38.0 35.0 41.0 27.0 41.0 39 35.49105961121181 38.0 35.0 41.0 27.0 41.0 40 35.42744367884186 38.0 35.0 41.0 26.0 41.0 41 35.37068369015742 38.0 35.0 41.0 26.0 41.0 42 35.297802164218226 38.0 35.0 41.0 26.0 41.0 43 35.18872299526925 38.0 35.0 40.0 25.0 41.0 44 34.9986360989845 38.0 35.0 40.0 24.0 41.0 45 34.92269294634748 37.0 35.0 40.0 23.0 41.0 46 34.88928148550409 37.0 35.0 40.0 23.0 41.0 47 34.81199363068805 37.0 35.0 40.0 23.0 41.0 48 34.71321091528298 37.0 35.0 40.0 23.0 41.0 49 34.66692839774347 37.0 35.0 40.0 24.0 41.0 50 34.57435905272157 36.0 35.0 40.0 24.0 41.0 51 34.44793902449536 36.0 35.0 40.0 23.0 41.0 52 34.0805739903567 36.0 34.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 2.0 12 3.0 13 10.0 14 22.0 15 41.0 16 102.0 17 193.0 18 468.0 19 1017.0 20 1852.0 21 3011.0 22 4727.0 23 7885.0 24 13691.0 25 26002.0 26 40875.0 27 49877.0 28 51523.0 29 48517.0 30 46936.0 31 50661.0 32 58673.0 33 73331.0 34 144738.0 35 217704.0 36 252366.0 37 236025.0 38 365088.0 39 855057.0 40 1838.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.304531160495223 16.196765348686135 21.87374374960329 33.624959741215356 2 38.97775207484568 18.562571358940662 22.122270728670287 20.337405837543365 3 25.294114420363616 19.43972309792425 36.06524940072203 19.200913080990095 4 21.663771168676277 22.064243224965697 34.86226597989686 21.409719626461168 5 20.3202444286152 30.117684949444367 31.86556269438822 17.69650792755221 6 73.77047124915467 2.0270444997684387 20.94741948047165 3.255064770605249 7 72.99346691021762 1.9934661265916425 19.707292188267708 5.305774774923028 8 63.67924934900272 3.495833852485544 25.38493667126655 7.439980127245187 9 36.09867104870314 14.87365206536381 31.1259764959224 17.90170039001065 10 24.778331801344542 15.67894530212308 39.11488662107531 20.42783627545707 11 22.481641602389747 12.543109224139757 43.048532307723654 21.926716865746844 12 19.15138791915174 13.184507087505162 45.95692094546042 21.707184047882684 13 15.659785646949853 16.77061465270872 45.0671528282237 22.502446872117726 14 15.121356237153433 17.500640614237387 45.63046236283606 21.747540785773115 15 18.091181151601067 14.211723201362883 45.610205631293006 22.086890015743048 16 18.00372849240549 18.517552046478425 41.55517628058198 21.923543180534104 17 18.27137594534679 20.052988788663125 40.74733625939274 20.92829900659735 18 19.06201537630895 24.890311953665766 37.31431002908036 18.73336264094493 19 19.593039520608972 20.503652088872588 36.69352152894832 23.20978686157012 20 20.18189526211897 24.53599546750734 36.24266232224424 19.039446948129445 21 17.639890950608837 19.84313375163288 36.769494067559535 25.747481230198748 22 18.43056956286992 22.256153227089325 35.715869758227875 23.59740745181288 23 19.01969957347238 19.639077546843204 38.984765527352856 22.35645735233156 24 22.355203550766035 18.474256711168785 36.08938508085845 23.081154657206735 25 18.10849928572492 18.642305302248456 38.82541518463403 24.423780227392587 26 17.94115595802586 17.632172234721054 39.05791701244163 25.368754794811455 27 21.203077455942587 18.75220884572677 39.153362656617446 20.891351041713193 28 21.154335920082687 20.592828725220766 34.81266245546066 23.440172899235886 29 20.924028245014767 18.329756080741685 38.24850973929547 22.497705934948073 30 22.656899552471206 18.091141970302143 35.66140775272525 23.590550724501398 31 22.374911744124176 17.368560455568797 34.735710384376375 25.520817415930647 32 20.673346294507017 18.589645636496282 35.76320076732656 24.973807301670142 33 18.02437703693778 18.232155465125118 37.7706154363347 25.972852061602403 34 18.521274269876084 19.849951297645436 34.87597943451982 26.752794997958656 35 18.820580212346968 22.063381236389397 31.841662102045344 27.274376449218295 36 21.185602596623042 21.6564050844788 29.507553762619317 27.650438556278843 37 20.153175370008597 21.933416867862636 30.244044638470235 27.66936312365853 38 20.53585911658709 19.21552770548828 28.779134234346483 31.469478943578146 39 22.999657555447413 17.87576237012379 33.66084981102859 25.4637302634002 40 20.765970885160396 17.374594375602904 36.38869102332933 25.470743715907375 41 20.734273214331893 21.52687171024019 32.763598065697636 24.975257009730285 42 19.98395133996124 17.892806235155184 34.66295071227684 27.46029171260674 43 22.517296584409447 19.481216093483443 34.73492675839792 23.266560563709184 44 21.17216341109254 19.77762261983404 35.67613992112021 23.374074047953208 45 21.61636179697975 19.542378101101857 34.141447623615036 24.699812478303357 46 22.184255543566078 18.612919328056396 33.786190786282475 25.41663434209506 47 20.169474790360457 19.918126757771024 34.56221559274644 25.35018285912207 48 20.856558048269793 18.381318670124024 32.349608461279864 28.41251482032632 49 19.936267699172255 16.348396975517172 36.69524550610092 27.02008981920965 50 19.729155353066602 16.395767165914776 37.77077216153039 26.10430531948823 51 18.27936893032703 15.45851131438369 37.86374938387407 28.398370371415204 52 16.273795782368257 16.760270789793115 40.170391632755255 26.795541795083373 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 615.0 1 3665.0 2 6715.0 3 99739.0 4 192763.0 5 110635.5 6 28508.0 7 26534.0 8 24560.0 9 23717.5 10 22875.0 11 21937.0 12 20999.0 13 19661.0 14 17117.5 15 15912.0 16 14887.0 17 13862.0 18 12856.0 19 11850.0 20 11291.0 21 10732.0 22 10089.0 23 9446.0 24 9465.5 25 9485.0 26 9692.0 27 9899.0 28 10829.5 29 11760.0 30 13183.0 31 14606.0 32 17456.0 33 20306.0 34 22569.0 35 24832.0 36 26698.5 37 28565.0 38 31238.5 39 36601.0 40 39290.0 41 44520.5 42 49751.0 43 57524.5 44 65298.0 45 78040.5 46 90783.0 47 115580.0 48 140377.0 49 187596.5 50 234816.0 51 255948.5 52 277081.0 53 256942.5 54 236804.0 55 208508.0 56 180212.0 57 158811.5 58 137411.0 59 125085.0 60 112759.0 61 109795.0 62 106831.0 63 108150.5 64 90882.5 65 72295.0 66 62002.0 67 51709.0 68 43314.5 69 34920.0 70 30925.5 71 26931.0 72 25845.0 73 24759.0 74 19794.0 75 14829.0 76 11188.5 77 7548.0 78 5772.0 79 3996.0 80 3032.5 81 2069.0 82 1496.0 83 923.0 84 705.5 85 488.0 86 356.0 87 224.0 88 158.0 89 57.0 90 22.0 91 19.5 92 17.0 93 11.0 94 5.0 95 3.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2552238.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.075630495691197 #Duplication Level Percentage of deduplicated Percentage of total 1 75.03699038433366 23.318217866922865 2 8.980774647091131 5.581664689961511 3 3.4001529527203145 3.169856903627096 4 1.9462192197854198 2.4191995735065643 5 1.3402303075737483 2.0824250908644184 6 1.0896202850107268 2.0316382414561844 7 0.8587867267828696 1.8681137297275996 8 0.7693532647384113 1.9126510220531645 9 0.7001714586765531 1.9582442580115518 >10 5.5178244863514925 30.10523297131533 >50 0.1954881899429313 4.256363994793182 >100 0.15315333103842946 8.634346668896615 >500 0.005932955728735548 1.2697232264386396 >1k 0.0042919254207874164 2.902263745305942 >5k 6.31165503056973E-4 1.508698569229797 >10k+ 3.786993018341838E-4 6.9813594478894165 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 146115 5.724975492097524 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 18054 0.7073791707513171 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 13801 0.540741106432864 No Hit CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT 9528 0.373319416135956 No Hit CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCTT 7848 0.307494833945737 Illumina Single End Adapter 2 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC 7397 0.2898240681315771 No Hit CGTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCT 7018 0.2749743558398551 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTC 6669 0.26130008251581555 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 4849 0.18999011847641167 No Hit GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT 4712 0.184622280523995 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTT 4707 0.18442637402938125 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 4097 0.16052578168650417 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCG 3706 0.14520589380770915 No Hit CGTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTG 3686 0.14442226782925416 No Hit GGGCCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCT 3010 0.1179357097574756 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA 2979 0.11672108949087037 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCT 2965 0.11617255130595186 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2792 0.10939418659231623 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3174468838721154 0.0 2 0.0 0.0 0.0 1.0044517791836027 0.0 3 0.0 0.0 0.0 1.7369069812454794 0.0 4 0.0 0.0 0.0 2.243834626708011 0.0 5 0.0 0.0 0.0 4.7119821897487615 0.0 6 0.0 0.0 0.0 5.974129371947287 0.0 7 0.0 0.0 0.0 9.012168927819427 0.0 8 0.0 0.0 0.0 12.142088629665416 0.0 9 0.0 0.0 0.0 15.532799057141222 0.0 10 0.0 0.0 0.0 17.173672674727044 0.0 11 0.0 0.0 0.0 18.399537974123103 0.0 12 0.0 0.0 0.0 19.229280341410167 0.0 13 0.0 0.0 0.0 19.662037788011933 0.0 14 0.0 0.0 0.0 19.940812729847295 0.0 15 3.918129892274937E-5 0.0 0.0 20.574295970830306 0.0 16 3.918129892274937E-5 0.0 0.0 21.2359897470377 0.0 17 3.918129892274937E-5 0.0 0.0 22.126267221160408 0.0 18 3.918129892274937E-5 0.0 0.0 22.587666197274707 0.0 19 3.918129892274937E-5 0.0 0.0 23.1522295334526 0.0 20 3.918129892274937E-5 0.0 0.0 23.736148431298336 0.0 21 1.175438967682481E-4 0.0 0.0 24.35446850959824 0.0 22 1.175438967682481E-4 0.0 0.0 24.975374553627052 0.0 23 1.175438967682481E-4 0.0 0.0 25.485201615209867 0.0 24 1.5672519569099748E-4 0.0 0.0 25.923366081062973 0.0 25 1.5672519569099748E-4 0.0 0.0 26.33915802523119 0.0 26 1.5672519569099748E-4 0.0 0.0 26.78010436330781 0.0 27 1.9590649461374683E-4 0.0 0.0 27.247380534260518 0.0 28 2.350877935364962E-4 0.0 0.0 27.698553191355977 0.0 29 2.350877935364962E-4 0.0 0.0 28.150509474429892 0.0 30 2.350877935364962E-4 0.0 0.0 28.558935334400633 0.0 31 2.7426909245924555E-4 0.0 0.0 28.974257102981774 0.0 32 2.7426909245924555E-4 0.0 0.0 29.440984735749566 0.0 33 2.7426909245924555E-4 0.0 0.0 29.881343354342345 0.0 34 2.7426909245924555E-4 0.0 0.0 30.387409011228577 0.0 35 3.1345039138199496E-4 0.0 0.0 30.82537757058707 0.0 36 3.1345039138199496E-4 0.0 0.0 31.271064845833344 0.0 37 3.1345039138199496E-4 0.0 0.0 31.790687232146844 0.0 38 3.1345039138199496E-4 0.0 0.0 32.33240787105278 0.0 39 3.1345039138199496E-4 0.0 0.0 32.919853085801556 0.0 40 3.1345039138199496E-4 0.0 0.0 33.48038074819041 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 37940 0.0 45.327095 1 TCACGAC 405 0.0 43.728397 24 CACTTAC 4475 0.0 43.173187 36 CGCACTT 4525 0.0 42.79779 34 ACTTACT 4430 0.0 42.781036 37 GCACTTA 4555 0.0 42.667397 35 CACGACG 395 0.0 42.50633 25 CCGCACT 4570 0.0 42.426697 33 ACCCGCA 4660 0.0 42.002144 31 CTTACTG 4510 0.0 41.920177 38 ATCAACG 5375 0.0 41.80651 14 TCAACGC 5385 0.0 41.728874 15 CCCGCAC 4705 0.0 41.649307 32 CGCAAGC 5345 0.0 41.56782 19 CTTAATC 5850 0.0 41.51795 10 AACGCAA 5390 0.0 41.47681 17 CAACGCA 5400 0.0 41.442593 16 GCTTATG 5225 0.0 41.33397 24 GACTTAA 5850 0.0 41.321365 8 CTTATGA 5215 0.0 41.280922 25 >>END_MODULE