SRR1043315_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043315_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2484207
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	137862	5.549537538538455	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	17091	0.6879861460820295	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	11691	0.4706129561666963	No Hit
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	8886	0.3576996602940093	No Hit
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	7675	0.3089517097407744	No Hit
CGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTG	6936	0.2792037861579168	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTC	6637	0.2671677521237159	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTT	6252	0.25166984876864124	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4878	0.19636044822351761	No Hit
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	4598	0.18508924578346328	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCT	4450	0.17913161020800603	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3926	0.15803835992733295	No Hit
CGTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCT	3554	0.14306376239983223	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCC	3437	0.1383540099516667	No Hit
GGGCCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTC	3219	0.1295785737661958	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	2937	0.11822686273728397	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTC	2752	0.11077981826796238	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2721	0.10953193514067064	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2604	0.1048221826925051	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	35645	44.394024	1
CGAAACG	75	42.0	13
TACGGGT	205	41.707314	3
CACTTAC	4210	41.31235	36
ACTTACT	4140	41.304348	37
ACGGGTA	285	41.05263	4
CGCACTT	4270	40.942623	34
ACCGGTA	165	40.90909	41
TCGGCGT	1765	40.793198	4
CCGCACT	4305	40.609756	33
GCACTTA	4295	40.599537	35
TTAACGG	100	40.5	1
ACGGGAT	335	40.298508	4
CTTACTG	4250	40.235294	38
CCCGCAC	4430	40.22573	32
TAGTAGG	565	40.221237	1
GTTTTTT	39795	40.216736	2
ACCCGCA	4420	40.214935	31
GTGGCGT	1625	40.153847	34
GTCCCCC	1930	39.870464	9

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content